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Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields using GPUs and Multi-GPUs systems

Olivier Adjoua, Louis Lagardère, Luc-Henri Jolly, Arnaud Durocher, Thibaut Very, Isabelle Dupays, Zhi Wang, Théo Jaffrelot Inizan, Frédéric Célerse, Pengyu Ren, Jay W. Ponder, Jean-Philip Piquemal

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Tags: Biophysics, Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia DGX-A100, OpenACC, Package, Physics, Tesla V100

November 8, 2020 by hgpu

Performance Assessment of OpenMP Compilers Targeting NVIDIA V100 GPUs

Joshua Hoke Davis, Christopher Daley, Swaroop Pophale, Thomas Huber, Sunita Chandrasekaran, Nicholas J. Wright

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, OpenACC, OpenMP, Performance, Tesla V100

October 25, 2020 by hgpu

8 Steps to 3.7 TFLOP/s on NVIDIA V100 GPU: Roofline Analysis and Other Tricks

Charlene Yang

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Tags: Computer science, HPC, nVidia, OpenACC, Optimization, Package, Performance, Tesla V100

August 30, 2020 by hgpu

Multi-GPU Performance Optimization of a CFD Code using OpenACC on Different Platforms

Weicheng Xue, Christoper J. Roy

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Tags: cfd, Fluid dynamics, MPI, nVidia, OpenACC, Performance, Tesla C2050, Tesla M2015, Tesla P100, Tesla V100

June 7, 2020 by hgpu

Tools for GPU Computing – Debugging and Performance Analysis of Heterogenous HPC Applications

Michael Knobloch, Bernd Mohr

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Tags: Computer science, CUDA, HPC, nVidia, OpenACC, OpenCL, Performance

May 3, 2020 by hgpu

Automatic Parallelization for Heterogeneous Embedded Systems

Rokiatou Diarra

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia Quadro M 2000 M, nVidia Tegra TX1, OpenACC, OpenCL, Thesis

April 26, 2020 by hgpu

Scalable Applications on Heterogeneous System Architectures: A Systematic Performance Analysis Framework

Robert Dietrich

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Tags: Computer science, CUDA, Data acquisition, Heterogeneous systems, MPI, nVidia, OpenACC, OpenCL, Tesla K80, Tesla V100, Thesis

December 1, 2019 by hgpu

Parallelizing Multiple Flow Accumulation Algorithm using CUDA and OpenACC

Natalija Stojanovic, Dragan Stojanovic

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Tags: Algorithms, Computer science, CUDA, nVidia, OpenACC, Package, Tesla K80

September 15, 2019 by hgpu

An optimizing multi-platform source-to-source compiler framework for the NEURON MODeling Language

Pramod Kumbhar, Omar Awile, Liam Keegan, Jorge Blanco Alonso, James King, Michael Hines, Felix Schuermann

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Tags: Biophysics, Code generation, Compilers, Computer science, CUDA, HPC, Intel Xeon Phi, LLVM, nVidia, OpenACC, OpenMP, Package

May 15, 2019 by hgpu

Loop Perforation in OpenACC

Ahmad Lashgar, Ehsan Atoofian, Amirali Baniasadi

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Tags: Computer science, CUDA, OpenACC, OpenCL, Package, Performance

April 20, 2019 by hgpu

Using Compiler Directives for Performance Portability in Scientific Computing: Kernels from Molecular Simulation

Ada Sedova, Andreas Tillack, Arnold Tharrington

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Tags: Chemistry, Molecular dynamics, Molecular simulation, nVidia, OpenACC, performance portability, Physics, Tesla K20

March 3, 2019 by hgpu

Exploiting OpenMP & OpenACC to Accelerate a Molecular Docking Mini-App in Heterogeneous HPC Nodes

Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Andrea Beccari, Carlo Cavazzoni, Cristina Silvano

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Tags: Computer science, CUDA, Heterogeneous systems, HPC, molecular docking, MPI, nVidia, OpenACC, OpenMP, Tesla K80

January 27, 2019 by hgpu

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high performance computing on graphics processing units: hgpu.org

Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields using GPUs and Multi-GPUs systems

Performance Assessment of OpenMP Compilers Targeting NVIDIA V100 GPUs

8 Steps to 3.7 TFLOP/s on NVIDIA V100 GPU: Roofline Analysis and Other Tricks

Multi-GPU Performance Optimization of a CFD Code using OpenACC on Different Platforms

Tools for GPU Computing – Debugging and Performance Analysis of Heterogenous HPC Applications

Automatic Parallelization for Heterogeneous Embedded Systems

Scalable Applications on Heterogeneous System Architectures: A Systematic Performance Analysis Framework

Parallelizing Multiple Flow Accumulation Algorithm using CUDA and OpenACC

An optimizing multi-platform source-to-source compiler framework for the NEURON MODeling Language

Loop Perforation in OpenACC

Using Compiler Directives for Performance Portability in Scientific Computing: Kernels from Molecular Simulation

Exploiting OpenMP & OpenACC to Accelerate a Molecular Docking Mini-App in Heterogeneous HPC Nodes

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