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Accelerating bioinformatics applications on CUDA-enabled multi-GPU systems

Robin Kobus

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Tags: Bioinformatics, Biology, CUDA, Databases, Hashing, nVidia, nVidia Quadro GV100, Package, Sequence alignment, Tesla P100, Tesla V100, Thesis

November 27, 2023 by hgpu

CHARM-SYCL: New Unified Programming Environment for Multiple Accelerator Types

Norihisa Fujita, Beau Johnston, Ryohei Kobayashi, Keita Teranishi, Seyong Lee, Taisuke Boku, Jeffrey S. Vetter

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Tags: AMD Radeon Instinct MI100, ATI, Computer science, CUDA, Heterogeneous systems, nVidia, Package, performance portability, SYCL, Tesla V100

November 19, 2023 by hgpu

An approach to performance portability through generic programming

Andreas Hadjigeorgiou, Christodoulos Stylianou, Michele Weiland, Dirk Jacob Verschuur, Jacob Finkenrath

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Tags: AMD Radeon Instinct MI100, ATI, Benchmarking, Computer science, CUDA, HIP, HPC, nVidia, OpenMP, Package, Performance, performance portability, Portability, Tesla V100

November 12, 2023 by hgpu

OpenRAND: A Performance Portable, Reproducible Random Number Generation Library for Parallel Computations

Shihab Shahriar Khan, Bryce Palmer, Christopher Edelmaierd, Hasan Metin Aktulga

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Tags: Computer science, CUDA, HPC, nVidia, nVidia A100, Package, Pseudo-random number generators, Tesla V100

November 5, 2023 by hgpu

Predicting the Execution Time of a kernel on a specific GPU using PTX code

Monika Dagar, Jorge Roldan

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Tags: Computer science, CUDA, Deep learning, Machine learning, nVidia, nVidia GeForce GTX 1650, nVidia GeForce GTX Titan XP, Performance, PTX, Tesla K20, Tesla K80, Tesla M60, Tesla P100, Tesla T4, Tesla V100

October 22, 2023 by hgpu

Fortran performance optimisation and auto-parallelisation by leveraging MLIR-based domain specific abstractions in Flang

Nick Brown, Maurice Jamieson, Anton Lydike, Emilien Bauer, Tobias Grosser

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Tags: Computer science, Fortran, HPC, LLVM, MPI, nVidia, Package, Performance, Tesla V100

October 8, 2023 by hgpu

Novel Parallelization Strategies for High-Performance DNN Training on HPC Systems

Arpan Jain

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Tags: Artificial intelligence, Computer science, CUDA, Data parallelism, Deep learning, HPC, Machine learning, MPI, Neural networks, nVidia, Speech recognition, Tesla K80, Tesla V100, Thesis

October 1, 2023 by hgpu

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, ATI, Bioinformatics, Biology, Computer science, CUDA, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Programming Languages, Smith-Waterman algorithm, SYCL, Tesla V100

September 24, 2023 by hgpu

Towards Intelligent Runtime Framework for Distributed Heterogeneous Systems

Polykarpos Thomadakis

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Tags: Computer science, CUDA, Heterogeneous systems, Machine learning, Nuclear physics, nVidia, OpenCL, Physics, Task scheduling, Tesla V100, Thesis

July 16, 2023 by hgpu

Mystique: Enabling Accurate and Scalable Generation of Production AI Benchmarks

Mingyu Liang, Wenyin Fu, Louis Feng, Zhongyi Lin, Pavani Panakanti, Shengbao Zheng, Srinivas Sridharan, Christina Delimitrou

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Tags: AI, Benchmarking, Code generation, Computer science, CUDA, nVidia, Package, Performance, PyTorch, Tesla A100, Tesla V100

July 16, 2023 by hgpu

Managing, Profiling, and Optimizing Heterogeneous GPU Workloads

James Gleeson

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Tags: Computer science, CUDA, Heterogeneous systems, Neural networks, nVidia, nVidia GeForce GTX 480, nVidia GeForce RTX 2080 Ti, nVidia Grid K1, Optimization, Package, Performance, Tesla V100, Thesis, Virtualization

July 2, 2023 by hgpu

Reducing branch divergence to speed up parallel execution of unit testing on GPUs

Taghreed Bagies, Wei Le, Jeremy Sheafer, Ali Jannesari

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Tags: Benchmarking, Computer science, CUDA, nVidia, Package, Performance, Tesla V100

June 18, 2023 by hgpu

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

CHARM-SYCL: New Unified Programming Environment for Multiple Accelerator Types

AFOCL: Portable OpenCL Programming of FPGAs via Automated Built-in Kernel Management

pp-template: Template for Performance-Portable code development, targeting HOST-DEVICE computer architectures

An approach to performance portability through generic programming

Redco: A Lightweight Tool to Automate Distributed Training

Redco: A Lightweight Tool to Automate Distributed Training of LLMs on Any GPU/TPUs

OpenRAND: Reproducible Random Number For Parallel Computations

OpenRAND: A Performance Portable, Reproducible Random Number Generation Library for Parallel Computations

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high performance computing on graphics processing units: hgpu.org

Accelerating bioinformatics applications on CUDA-enabled multi-GPU systems

CHARM-SYCL: New Unified Programming Environment for Multiple Accelerator Types

An approach to performance portability through generic programming

OpenRAND: A Performance Portable, Reproducible Random Number Generation Library for Parallel Computations

Predicting the Execution Time of a kernel on a specific GPU using PTX code

Fortran performance optimisation and auto-parallelisation by leveraging MLIR-based domain specific abstractions in Flang

Novel Parallelization Strategies for High-Performance DNN Training on HPC Systems

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Towards Intelligent Runtime Framework for Distributed Heterogeneous Systems

Mystique: Enabling Accurate and Scalable Generation of Production AI Benchmarks

Managing, Profiling, and Optimizing Heterogeneous GPU Workloads

Reducing branch divergence to speed up parallel execution of unit testing on GPUs

Recent source codes

miniBUDE: A BUDE virtual-screening benchmark, in many programming models

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GT4Py: GridTools for Python

AUCMEDI: a framework for Automated Classification of Medical Images

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

CHARM-SYCL: New Unified Programming Environment for Multiple Accelerator Types

AFOCL: Portable OpenCL Programming of FPGAs via Automated Built-in Kernel Management

pp-template: Template for Performance-Portable code development, targeting HOST-DEVICE computer architectures

Redco: A Lightweight Tool to Automate Distributed Training

OpenRAND: Reproducible Random Number For Parallel Computations

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