high performance computing on graphics processing units: hgpu.org

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Benchmarking GPU and CPU codes for Heisenberg spin glass overrelaxation

M. Bernaschi, G. Parisi, L. Parisi

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Tags: Condensed matter, CUDA, nVidia, nVidia GeForce GTX 480, Package, Physics, Spin Systems, Tesla C1060, Tesla C2050

March 9, 2011 by hgpu

Redesigning combustion modeling algorithms for the Graphics Processing Unit (GPU): Chemical kinetic rate evaluation and ordinary differential equation integration

Yu Shi, William H. Green, Hsi-Wu Wong, Oluwayemisi O. Oluwole

Tags: Chemistry, Computational modelling, CUDA, nVidia, nVidia GeForce GTX 260, Tesla C2050

March 4, 2011 by hgpu

A Generic Approach for Developing Highly Scalable Particle-Mesh Codes for GPUs

W. Honig, F. Schmitt, R. Widera, H. Burau, G. Juckeland, M. S. Muller, and M. Bussmann

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Tags: ATI Radeon HD 5770, Computer science, CUDA, nVidia, OpenCL, Particle-in-cell methods, Plasma physics, Tesla C2050, Tesla S1070

February 19, 2011 by hgpu

OpenCL Evaluation for Numerical Linear Algebra Library Development

Peng Du, Piotr Luszczek, Jack Dongarra

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Tags: ATI Radeon HD 5870, Computer science, Linear Algebra, nVidia, nVidia GeForce GTX 280, OpenCL, Performance, Tesla C2050

February 17, 2011 by hgpu

Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units – Radial Distribution Function Histogramming

Benjamin G. Levine, John E. Stone, Axel Kohlmeyer

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Tags: Chemistry, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Tesla C1060, Tesla C2050, Tesla S1070

February 9, 2011 by hgpu

QUDA programming for staggered quarks

Steven Gottlieb, Guochun Shi, Aaron Torok, Volodymyr Kindratenko

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Physics, QCD, Tesla C1060, Tesla C2050, Tesla S1070

February 4, 2011 by hgpu

An Improved Magma Gemm For Fermi Graphics Processing Units

Rajib Nath, Stanimire Tomov, Jack Dongarra

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Tags: BLAS, Computer science, CUDA, Linear Algebra, Matrix multiplication, nVidia, Package, Tesla C2050

January 23, 2011 by hgpu

Towards microsecond biological molecular dynamics simulations on hybrid processors

Scott Hampton, Pratul K. Agarwal, Sadaf R. Alam, Paul S. Crozier

Tags: Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, Tesla C1060, Tesla C2050

January 19, 2011 by hgpu

Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations

Scott S. Hampton, Sadaf R. Alam, Paul S. Crozier, Pratul K. Agarwal

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Tags: Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, Tesla C1060, Tesla C2050

January 19, 2011 by hgpu

GPU-Friendly Multi-View Stereo Reconstruction Using Surfel Representation and Graph Cuts

Ju Y. Chang, Haesol Park, In K. Park, Kyoung M. Lee, Sang U. Lee

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Tags: Computer science, Computer vision, CUDA, nVidia, Tesla C2050

January 14, 2011 by hgpu

GPU accelerated biochemical network simulation

Yanxiang Zhou, Juliane Liepe, Xia Sheng, Michael P. H. Stumpf, Chris Barnes

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Tags: Bioinformatics, Biology, CUDA, GPU cluster, nVidia, Package, Tesla C2050

January 13, 2011 by hgpu

DSPSR: Digital Signal Processing Software for Pulsar Astronomy

W. van Straten, M. Bailes

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Tags: Astrophysics, CUDA, FFT, Instrumentation and Methods for Astrophysics, nVidia, Package, Physics, Tesla C2050

December 21, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Benchmarking GPU and CPU codes for Heisenberg spin glass overrelaxation

Redesigning combustion modeling algorithms for the Graphics Processing Unit (GPU): Chemical kinetic rate evaluation and ordinary differential equation integration

A Generic Approach for Developing Highly Scalable Particle-Mesh Codes for GPUs

OpenCL Evaluation for Numerical Linear Algebra Library Development

Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units – Radial Distribution Function Histogramming

QUDA programming for staggered quarks

An Improved Magma Gemm For Fermi Graphics Processing Units

Towards microsecond biological molecular dynamics simulations on hybrid processors

Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations

GPU-Friendly Multi-View Stereo Reconstruction Using Surfel Representation and Graph Cuts

GPU accelerated biochemical network simulation

DSPSR: Digital Signal Processing Software for Pulsar Astronomy

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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