high performance computing on graphics processing units: hgpu.org

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Simulation of 1+1 dimensional surface growth and lattices gases using GPUs

Henrik Schulz, Geza Odor, Gergely Odor, Máté Ferenc Nagy

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Tags: ATI, ATI Radeon HD 5970, Computational Physics, CUDA, Disordered Systems and Neural Networks, nVidia, nVidia Quadro FX 5800, OpenCL, Physics, Statistical Mechanics, Tesla C1060

December 3, 2010 by hgpu

GPU-BLAST: Using graphics processors to accelerate protein sequence alignment

Panagiotis D. Vouzis, Nikolaos V. Sahinidis

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Tags: Bioinformatics, Biology, BLAST, CUDA, nVidia, Package, Sequence alignment, Tesla C2050

November 30, 2010 by hgpu

StarPU: A Unified Platform for Task Scheduling on Heterogeneous Multicore Architectures

Cedric Augonnet, Samuel Thibault, Raymond Namyst, Pierre-Andre Wacrenier

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Tags: Computer science, CUDA, Distributed computing, nVidia, nVidia Quadro FX 4600, Package, Performance

November 28, 2010 by hgpu

Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence

R. Yokota, T. Narumi, R. Sakamaki, S. Kameoka, S. Obi, K. Yasuoka

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Tags: CUDA, Fast multipole method, Fluid dynamics, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce 8800 GT, Physics

November 28, 2010 by hgpu

Understanding software approaches for GPGPU reliability

Martin Dimitrov, Mike Mantor, Huiyang Zhou

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Tags: ATI, ATI Stream, Brook, Computer science, CUDA, Hardware, nVidia, nVidia GeForce 8800 GTX, Performance

November 28, 2010 by hgpu

Highly accelerated feature detection in proteomics data sets using modern graphics processing units

Rene Hussong, Barbara Gregorius, Andreas Tholey, Andreas Hildebrandt

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Tesla C870

November 28, 2010 by hgpu

Scattering Points in Parallel Coordinates

Xiaoru Yuan, Peihong Guo, He Xiao, Hong Zhou, Huamin Qu

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Tags: Computer science, CUDA, Multidimensional scaling, nVidia, Tesla C870, Visualization

November 28, 2010 by hgpu

Exploring Reconfigurable Architectures for Tree-Based Option Pricing Models

Qiwei Jin, David B. Thomas, Wayne Luk, Benjamin Cope

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Tags: CUDA, Finance, FPGA, nVidia, nVidia GeForce 7900 GTX

November 28, 2010 by hgpu

42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence

Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji

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Tags: Astrophysics, CUDA, Fast multipole method, N-body simulation, nVidia, nVidia GeForce 8800 GTS, Performance

November 28, 2010 by hgpu

On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs

Fang Xu, Wei Xu, Mel Jones, Bettina Keszthelyi, John Sedat, David Agard, Klaus Mueller

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Tags: Cg, Computed tomography, CT, CUDA, Image reconstruction, Medicine, nVidia, nVidia GeForce 8800 GTX

November 28, 2010 by hgpu

Complexity effective memory access scheduling for many-core accelerator architectures

George L. Yuan, Ali Bakhoda, Tor M. Aamodt

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Tags: Architecture, Computer science, CUDA, Hardware, Memory, nVidia

November 28, 2010 by hgpu

Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA

Haixiang Shi, B. Schmidt, Weiguo Liu, W. Muller-Wittig

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Tags: Algorithms, Computer science, CUDA, Error recovery, nVidia, nVidia GeForce GTX 280

November 27, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Simulation of 1+1 dimensional surface growth and lattices gases using GPUs

GPU-BLAST: Using graphics processors to accelerate protein sequence alignment

StarPU: A Unified Platform for Task Scheduling on Heterogeneous Multicore Architectures

Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence

Understanding software approaches for GPGPU reliability

Highly accelerated feature detection in proteomics data sets using modern graphics processing units

Scattering Points in Parallel Coordinates

Exploring Reconfigurable Architectures for Tree-Based Option Pricing Models

42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence

On the efficiency of iterative ordered subset reconstruction algorithms for acceleration on GPUs

Complexity effective memory access scheduling for many-core accelerator architectures

Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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