high performance computing on graphics processing units: hgpu.org

Graph neural networks (GNNs) have recently exploded in popularity thanks to their broad applicability to ubiquitous graph-related problems such as quantum chemistry, drug discovery, and high energy physics. However, meeting demand for novel GNN models and fast inference simultaneously is challenging because of the gap between the difficulty in developing efficient FPGA accelerators and the […]

In a general graph data structure like an adjacency matrix, when edges are homogeneous, the connectivity of two nodes can be sufficiently represented using a single bit. This insight has, however, not yet been adequately exploited by the existing matrix-centric graph processing frameworks. This work fills the void by systematically exploring the bit-level representation of […]

We introduce the R package clrng which leverages the gpuR package and is able to generate random numbers in parallel on a Graphics Processing Unit (GPU) with the clRNG (OpenCL) library. Parallel processing with GPU’s can speed up computationally intensive tasks, which when combined with R, it can largely improve R’s downsides in terms of […]

Auto-scheduling is a process where a search algorithm automatically explores candidate schedules (program transformations) for a given tensor program on a given hardware platform to improve its performance. However this can be a very time consuming process, depending on the complexity of the tensor program, and capacity of the target device, with often many thousands […]

GPU (Graphics Processing Unit) computing is one of the most popular accelerating methods for various high-performance computing applications. For scientific computations based on multi-physical phenomena, however, a single device solution on a GPU is insufficient, where the single timescale or degree of parallelism is not simply supported by a simple GPU-only solution. We have been […]

Parametric and non-parametric machine learning potentials have emerged recently as a way to improve the accuracy of bio-molecular simulations. Here, we present NNP/MM, an hybrid method integrating neural network potentials (NNPs) and molecular mechanics (MM). It allows to simulate a part of molecular system with NNP, while the rest is simulated with MM for efficiency. […]

We devise a performance model for GPU training of Deep Learning Recommendation Models (DLRM), whose GPU utilization is low compared to other well-optimized CV and NLP models. We show that both the device active time (the sum of kernel runtimes) and the device idle time are important components of the overall device time. We therefore […]

Recent desktop and mobile processors often integrate CPU and GPU onto the same die. The limited memory bandwidth of these integrated architectures can negatively affect the performance of data-parallel workloads when all computational resources are active. The combination of active CPU and GPU cores achieving the maximum performance depends on a workload’s characteristics, making manual […]

Graphics Processing Units (GPUs) have evolved from very specialized designs geared towards computer graphics to accommodate general-purpose highly-parallel workloads. Harnessing the performance that these accelerators provide requires the use of specialized native programming interfaces, such as CUDA or OpenCL, or higher-level programming models like OpenMP or OpenACC. However, on managed programming languages, offloading execution into […]

As a standard C++ programming model, SYCL has gained popularity on incorporating various parallel computing frameworks. With the development of hardware technologies, low-level computing devices are becoming increasingly varied and thus result in the great heterogeneity of hardware. Although many computing frameworks, such as OpenCL, OpenMP and CUDA, can benefit to heterogeneous computing, they increase […]

Dynamic parallelism on GPUs allows GPU threads to dynamically launch other GPU threads. It is useful in applications with nested parallelism, particularly where the amount of nested parallelism is irregular and cannot be predicted beforehand. However, prior works have shown that dynamic parallelism may impose a high performance penalty when a large number of small […]

High Level Synthesis (HLS) tools, like the Intel FPGA SDK for OpenCL, improve design productivity and enable efficient design space exploration guided by simple program directives (pragmas), but may sometimes miss important optimizations necessary for high performance. In this paper, we present a study of the tradeoffs in HLS optimizations, and the potential of a […]