high performance computing on graphics processing units: hgpu.org

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On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution

Z. A. Taylor, O. Comas, M. Cheng, J. Passenger, D. J. Hawkes, D. Atkinson, S. Ourselin

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Tags: Anisotropy, CUDA, Finite element method, Medicine, Nonlinear analysis, nVidia GeForce 8800 GTX, Surgical simulation, Viscoelasticity

November 2, 2010 by hgpu

Accelerating Resolution-of-the-Identity Second-Order Moller-Plesset Quantum Chemistry Calculations with Graphical Processing Units

Leslie Vogt, Roberto Olivares-Amaya, Sean Kermes, Yihan Shao, Carlos Amador-Bedolla, Alan Aspuru-Guzik

Tags: Chemistry, Computational chemistry, CUBLAS, CUDA, Molecular modeling, nVidia, nVidia Quadro FX 5600

November 2, 2010 by hgpu

Real-time optical manipulation of micron sized structures using GPU generated holograms

S. Bianchi, R. Di Leonardo

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Tags: Computer holography, CUDA, Mesoscale and Nanoscale Physics, nVidia, nVidia GeForce GTX 260, Optical trapping, Physics, Soft Condensed Matter

November 2, 2010 by hgpu

Implementation of a Lattice–Boltzmann method for numerical fluid mechanics using the nVIDIA CUDA technology

E. Riegel, T. Indinger, N. Adams

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Tags: CUDA, Fluid dynamics, GPU cluster, Lattice Boltzmann model, LBUltra, nVidia, nVidia GeForce 8800 GTS, Presentation, Tesla C1060, Tesla S1070

November 2, 2010 by hgpu

Multilevel summation of electrostatic potentials using graphics processing units

David J. Hardy, John E. Stone, Klaus Schulten

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Tags: Chemistry, CUDA, Electrostatics, Molecular dynamics, Molecular modeling, Multilevel summation, nVidia, nVidia GeForce GTX 280, Physics, Tesla C870, Tesla D870

November 2, 2010 by hgpu

Fast and accurate protein substructure searching with simulated annealing and GPUs

Alex D. Stivala, Peter J. Stuckey, Anthony I. Wirth

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Tags: Bioinformatics, Biological Physics, Biology, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 285, Package, Tesla C1060

November 2, 2010 by hgpu

On sorting and load balancing on GPUs

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Sorting

November 2, 2010 by hgpu

General purpose molecular dynamics simulations fully implemented on graphics processing units

J. Anderson, C. Lorenz, A. Travesset

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Tags: Chemistry, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX, Physics, Polymer Systems

November 2, 2010 by hgpu

Thread-Scalable Evaluation of Multi-Jet Observables

Walter Giele, Gerben Stavenga, Jan-Christopher Winter

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Tags: CUDA, Hadronic Colliders, High Energy Physics - Phenomenology, Jets, LO Computations, nVidia, Package, Physics, QCD, Tesla C1060

November 2, 2010 by hgpu

Parallel external sorting for CUDA-enabled GPUs with load balancing and low transfer overhead

Hagen Peters, Ole Schulz-Hildebrandt, Norbert Luttenberger

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 280, Sorting

November 2, 2010 by hgpu

3D finite difference computation on GPUs using CUDA

Paulius Micikevicius

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Tags: Computer science, CUDA, Finite difference, nVidia, Tesla S1070, Wave equation

November 2, 2010 by hgpu

Improving Performance of Matrix Multiplication and FFT on GPU

Xiang Cui, Yifeng Chen, Hong Mei

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Tags: Computer science, CUDA, FFT, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 280

November 2, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution

Accelerating Resolution-of-the-Identity Second-Order Moller-Plesset Quantum Chemistry Calculations with Graphical Processing Units

Real-time optical manipulation of micron sized structures using GPU generated holograms

Implementation of a Lattice–Boltzmann method for numerical fluid mechanics using the nVIDIA CUDA technology

Multilevel summation of electrostatic potentials using graphics processing units

Fast and accurate protein substructure searching with simulated annealing and GPUs

On sorting and load balancing on GPUs

General purpose molecular dynamics simulations fully implemented on graphics processing units

Thread-Scalable Evaluation of Multi-Jet Observables

Parallel external sorting for CUDA-enabled GPUs with load balancing and low transfer overhead

3D finite difference computation on GPUs using CUDA

Improving Performance of Matrix Multiplication and FFT on GPU

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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