high performance computing on graphics processing units: hgpu.org

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iNFAnt: NFA pattern matching on GPGPU devices

Niccolo' Cascarano, Pierluigi Rolando, Fulvio Risso, Riccardo Sisto

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Tags: Computer science, CUDA, Networks, nVidia, nVidia GeForce GTX 260, String matching

January 11, 2011 by hgpu

Accelerating linpack with CUDA on heterogenous clusters

Massimiliano Fatica

Tags: Computer science, CUDA, GPU cluster, Linear Algebra, nVidia

January 11, 2011 by hgpu

CUDA-based real time surgery simulation

Youquan Liu, Suvranu De

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Tags: CUDA, Medicine, nVidia, nVidia GeForce 8800 GTX, Surgical simulation

January 11, 2011 by hgpu

Fast binding site mapping using GPUs and CUDA

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, Tesla C1060

January 11, 2011 by hgpu

Quality-score guided error correction for short-read sequencing data using CUDA

Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Muller-Wittig

Tags: Bioinformatics, Biology, CUDA, Error recovery, Genetics, nVidia

January 11, 2011 by hgpu

High-speed volume ray casting with CUDA

L. Marsalek, A. Hauber, P. Slusallek

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Tags: Computer science, CUDA, nVidia, Poster, Real-time graphics

January 10, 2011 by hgpu

Parallel drainage network computation on CUDA

L. Ortega, A. Rueda

Tags: CUDA, Earth and Space Sciences, Geoscience, nVidia

January 10, 2011 by hgpu

Canny edge detection on NVIDIA CUDA

Yuancheng Luo, Ramani Duraiswami

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Source codes

Tags: Computer vision, CUDA, Image processing, nVidia, nVidia GeForce 8800 GTX, Package

January 10, 2011 by hgpu

Molecular Dynamics Simulations on Commodity GPUs with CUDA

Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Muller-Wittig

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Tags: Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX

January 10, 2011 by hgpu

Comparing Hardware Accelerators in Scientific Applications: A Case Study

Rick Weber, Akila Gothandaraman, Robert J. Hinde, Gregory D. Peterson

Tags: ATI, Brook, Computer science, CUDA, FPGA, nVidia, OpenCL, Performance

January 10, 2011 by hgpu

Neville elimination on multi- and many-core systems: OpenMP, MPI and CUDA

P. Alonso, R. Cortina, F. Martinez-Zaldivar, J. Ranilla

Tags: Computer science, CUBLAS, CUDA, MPI, nVidia, OpenMP

January 10, 2011 by hgpu

Dense optical flow by iterative local window registration

G. Le Besnerais, F. Champagnat

Tags: Computer science, CUDA, nVidia, Optical flow

January 10, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

iNFAnt: NFA pattern matching on GPGPU devices

Accelerating linpack with CUDA on heterogenous clusters

CUDA-based real time surgery simulation

Fast binding site mapping using GPUs and CUDA

Quality-score guided error correction for short-read sequencing data using CUDA

High-speed volume ray casting with CUDA

Parallel drainage network computation on CUDA

Canny edge detection on NVIDIA CUDA

Molecular Dynamics Simulations on Commodity GPUs with CUDA

Comparing Hardware Accelerators in Scientific Applications: A Case Study

Neville elimination on multi- and many-core systems: OpenMP, MPI and CUDA

Dense optical flow by iterative local window registration

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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