high performance computing on graphics processing units: hgpu.org

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A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Sequence alignment, Smith-Waterman algorithm

January 4, 2011 by hgpu

Approximate Belief Propagation by Hierarchical Averaging of Outgoing Messages

Koichi Ogawara

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Tags: Computer vision, CUDA, Image processing, nVidia, nVidia GeForce GTX 285, Pattern recognition

January 4, 2011 by hgpu

Speeding up subset seed algorithm for intensive protein sequence comparison

Van Hoa Nguyen, Dominique Lavenier

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Sequence alignment

January 4, 2011 by hgpu

Fast GPU-based space-time correlation for activity recognition in video sequences

Mahsan Rofouei, Maryam Moazeni, Majid Sarrafzadeh

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Tags: Computer vision, CUDA, Image processing, nVidia, nVidia Quadro FX 5600

January 4, 2011 by hgpu

GPU-Assisted Z-Field Simplification

Alexander Bogomjakov, Craig Gotsman

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Tags: Cg, Image processing, nVidia, nVidia GeForce FX 5900, OpenGL, Triangular meshes

January 4, 2011 by hgpu

Local Search Algorithms on Graphics Processing Units. A Case Study: The Permutation Perceptron Problem

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 M GT, nVidia GeForce 8800 GTX, nVidia GeForce GTX 280, Search

January 4, 2011 by hgpu

Efficient Multiplication of Polynomials on Graphics Hardware

Pavel Emeliyanenko

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Tags: Computer science, CUDA, Linear Algebra, nVidia

January 4, 2011 by hgpu

Engineering of Computer Vision Algorithms Using Evolutionary Algorithms

Marc Ebner

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Tags: Algorithms, Computer science, Computer vision, nVidia, nVidia GeForce 9600 GT, OpenGL

January 4, 2011 by hgpu

GPU-Based Conjugate Gradient Solver for Lattice QCD with Domain-Wall Fermions

Ting-Wai Chiu, Tung-Han Hsieh, Yao-Yuan Mao, Kenji Ogawa

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Tags: Conjugate gradient solver, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, QCD

January 4, 2011 by hgpu

Real-Time Rendering of Point Based Water Surfaces

Kei Iwasaki, Yoshinori Dobashi, Fujiichi Yoshimoto, Tomoyuki Nishita

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Tags: Computer science, Fluid simulation, nVidia, nVidia GeForce 6800 GT, Particle simulation, Rendering

January 3, 2011 by hgpu

A hardware-aware debugger for the OpenGL shading language

Magnus Strengert, Thomas Klein, Thomas Ertl

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Tags: Computer science, GLSL, High-level Languages, nVidia, OpenGL, Package, Programming techniques

January 3, 2011 by hgpu

Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors

Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer

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Tags: Biology, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce 9800 GX2, nVidia GeForce GTX 280, nVidia Quadro FX 5600

January 3, 2011 by hgpu

Allo: Accelerator Design Language

Dato: A Task-Based Programming Model for Dataflow Accelerators

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

See all packages

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high performance computing on graphics processing units: hgpu.org

A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs

Approximate Belief Propagation by Hierarchical Averaging of Outgoing Messages

Speeding up subset seed algorithm for intensive protein sequence comparison

Fast GPU-based space-time correlation for activity recognition in video sequences

GPU-Assisted Z-Field Simplification

Local Search Algorithms on Graphics Processing Units. A Case Study: The Permutation Perceptron Problem

Efficient Multiplication of Polynomials on Graphics Hardware

Engineering of Computer Vision Algorithms Using Evolutionary Algorithms

GPU-Based Conjugate Gradient Solver for Lattice QCD with Domain-Wall Fermions

Real-Time Rendering of Point Based Water Surfaces

A hardware-aware debugger for the OpenGL shading language

Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors

Recent source codes

Allo: Accelerator Design Language

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

HPC Benchmark Survey

HDM: Home made Diffusion Models

General Matrix Multiplication (GEMM)

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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