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MDLab: A molecular dynamics simulation prototyping environment

Trevor Cickovski, Santanu Chatterjee, Jacob Wenger, Christopher R. Sweet, Jesus A. Izaguirre

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Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, Package, Python

November 6, 2010 by hgpu

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Smith-Waterman algorithm

November 6, 2010 by hgpu

Automatic fitting of spiking neuron models to electrophysiological recordings

Cyrille Rossant, Dan F. Goodman, Jonathan Platkiewicz, Romain Brette

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Tags: Adaptive threshold, Biology, CUDA, Distributed computing, Neuroscience, nVidia, nVidia GeForce GTX 295, Optimization, Package

November 6, 2010 by hgpu

Exploring the multiple-GPU design space

Dana Schaa, David Kaeli

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce 8800 GTX

November 6, 2010 by hgpu

GPU Computing for Atmospheric Modeling

Rory Kelly

Tags: CUDA, Earth and Space Sciences, nVidia

November 6, 2010 by hgpu

A Practical Quicksort Algorithm for Graphics Processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Sorting

November 6, 2010 by hgpu

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Samer Al-Kiswany, Abdullah Gharaibeh, Elizeu Santos-Neto, George Yuan, Matei Ripeanu

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Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 9800 GTX, Package, Storage system

November 6, 2010 by hgpu

Accelerating Dust Temperature Calculations with Graphics Processing Units

Patrik Jonsson, Joel Primack

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, Package, Physics, Tesla C1060

November 6, 2010 by hgpu

Fast scale invariant feature detection and matching on programmable graphics hardware

Nico Cornelis, Luc Van Gool

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8800 GTX

November 6, 2010 by hgpu

Efficient simulation of large-scale spiking neural networks using CUDA graphics processors

Jayram M. Nageswaran, Nikil Dutt, Jeffrey L. Krichmar, Alex Nicolau, Alex Veidenbaum

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Tags: Biology, Computer science, CUDA, Neural networks, nVidia, nVidia GeForce GTX 280, STDP

November 6, 2010 by hgpu

Magnetohydrodynamics simulations on graphics processing units

Hon-Cheng Wong, Un-Hong Wong, Xueshang Feng, Zesheng Tang

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Tags: Computational Physics, CUDA, Electrodynamics, Magnetohydrodynamics, nVidia, nVidia GeForce GTX 295, Physics

November 6, 2010 by hgpu

HPCToolkit

Refining HPCToolkit for application performance analysis at exascale

Open Catalog of Best Practices for Modernization and Optimization

Optimizing the Weather Research and Forecasting Model with OpenMP Offload and Codee

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

Exploring Scalability in C++ Parallel STL Implementations

$3D-fractal-generators$

3D-fractal-generators

Double-Precision Floating-Point Data Visualizations Using Vulkan API

VerCors: a verification toolset for verifying parallel and concurrent software

The VerCors Verifier: A Progress Report

HiCCL: A hierarchical collective communications library with portable optimizations

HiCCL: A Hierarchical Collective Communication Library

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high performance computing on graphics processing units: hgpu.org

MDLab: A molecular dynamics simulation prototyping environment

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Automatic fitting of spiking neuron models to electrophysiological recordings

Exploring the multiple-GPU design space

GPU Computing for Atmospheric Modeling

A Practical Quicksort Algorithm for Graphics Processors

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Accelerating Dust Temperature Calculations with Graphics Processing Units

Fast scale invariant feature detection and matching on programmable graphics hardware

Efficient simulation of large-scale spiking neural networks using CUDA graphics processors

Magnetohydrodynamics simulations on graphics processing units

Recent source codes

HPCToolkit

Open Catalog of Best Practices for Modernization and Optimization

Owl: Differential-based Side-Channel Leakage Detection for CUDA Applications

pSTL-Bench: Micro-benchmark suite designed to evaluate the scalability and efficiency of parallel C++ STL implementations

GPU-Smash: Compression abstraction library

Noarr Structures

SyncPerformance

3D-fractal-generators

VerCors: a verification toolset for verifying parallel and concurrent software

HiCCL: A hierarchical collective communications library with portable optimizations

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