high performance computing on graphics processing units: hgpu.org

hgpu.org » Medical Physics

Clinically applicable Monte Carlo-based biological dose optimization for the treatment of head and neck cancers with spot-scanning proton therapy

H. Wan Chan Tseung, J. Ma, C. R. Kreofsky, D. Ma, C. Beltran

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Tags: Medical Physics, nVidia, nVidia GeForce GTX Titan X, Physics, Tesla K20

March 12, 2016 by hgpu

Multi-GPU implementation of a VMAT treatment plan optimization algorithm

Zhen Tian, Fei Peng, Michael Folkerts, Jun Tan, Xun Jia, Steve B. Jiang

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Tags: CUDA, Medical Physics, nVidia, nVidia GeForce GTX 590, Physics

March 6, 2015 by hgpu

An OpenCL-based Monte Carlo dose calculation engine (oclMC) for coupled photon-electron transport

Zhen Tian, Feng Shi, Michael Folkerts, Nan Qin, Steve B. Jiang, Xun Jia

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Tags: AMD Radeon R9 290X, ATI, Medical Physics, nVidia, nVidia GeForce GTX Titan, OpenCL, Physics, Radiotherapy

March 6, 2015 by hgpu

A fast marching method based back projection algorithm for photoacoustic tomography in heterogeneous media

Tianren Wang, Yun Jing

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Tags: CUDA, Heterogeneous systems, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C2075, Tomography

January 19, 2015 by hgpu

A fast GPU-based Monte Carlo simulation of proton transport with detailed modeling of non-elastic interactions

H. Wan Chan Tseung, J. Ma, C. Beltran

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Tags: CUDA, Medical Physics, Monte Carlo simulation, nVidia, nVidia GeForce GTX 680, Physics, Tesla K20

October 3, 2014 by hgpu

A study of the speed and the accuracy of the Boundary Element Method as applied to the computational simulation of biological organs

Kirana Kumara P

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Source codes

Tags: Computational Physics, Computer science, CUDA, Fortran, Mathematical Software, Medical Physics, MPI, nVidia, nVidia Quadro 4000, Package

November 19, 2013 by hgpu

Comprehensive Evaluations of Cone-beam CT dose in Image-guided Radiation Therapy via GPU-based Monte Carlo simulations

Davide Montanari, Enrica Scolari, Chiara Silvestri, Yan J. Graves, Hao Yan, Laura Cervino, Roger Rice, Steve B. Jiang, Xun Jia

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Tags: Computed tomography, CT, CUDA, Medical Physics, Medicine, Monte Carlo simulation, nVidia, nVidia GeForce GTX 590, Physics

September 20, 2013 by hgpu

Accelerating Image Reconstruction in Three-Dimensional Optoacoustic Tomography on Graphics Processing Units

Kun Wang, Chao Huang, Yu-Jiun Kao, Cheng-Ying Chou, Alexander A. Oraevsky, Mark A. Anastasio

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Tags: CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060, Tesla C2050, Tomography

April 9, 2013 by hgpu

GPU-based Monte Carlo radiotherapy dose calculation using phase-space sources

Reid Townson, Xun Jia, Zhen Tian, Yan Jiang Graves, Sergei Zavgorodni, Steve B Jiang

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Tags: Medical Physics, nVidia, nVidia GeForce GTX 580, Physics, Radiotherapy

February 9, 2013 by hgpu

CT to Cone-beam CT Deformable Registration With Simultaneous Intensity Correction

Xin Zhen, Xuejun Gu, Hao Yan, Linghong Zhou, Xun Jia, Steve B. Jiang

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Tags: Computed tomography, CT, CUDA, Image registration, Medical Physics, Medicine, nVidia, Physics, Tesla C1060, Tomography

May 3, 2012 by hgpu

A GPU Tool for Efficient, Accurate, and Realistic Simulation of Cone Beam CT Projections

Xun Jia, Hao Yan, Laura Cervino, Michael Folkerts, Steve B. Jiang

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Tags: Algorithms, Computed tomography, CT, Medical Physics, nVidia, nVidia GeForce GTX 580, Physics, Raytracing

May 3, 2012 by hgpu

GPU computing in medical physics: A review

Guillem Pratx, Lei Xing

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Tags: CUDA, Image processing, Image reconstruction, Medical Physics, Medicine, nVidia, Review

April 19, 2012 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

Clinically applicable Monte Carlo-based biological dose optimization for the treatment of head and neck cancers with spot-scanning proton therapy

Multi-GPU implementation of a VMAT treatment plan optimization algorithm

An OpenCL-based Monte Carlo dose calculation engine (oclMC) for coupled photon-electron transport

A fast marching method based back projection algorithm for photoacoustic tomography in heterogeneous media

A fast GPU-based Monte Carlo simulation of proton transport with detailed modeling of non-elastic interactions

A study of the speed and the accuracy of the Boundary Element Method as applied to the computational simulation of biological organs

Comprehensive Evaluations of Cone-beam CT dose in Image-guided Radiation Therapy via GPU-based Monte Carlo simulations

Accelerating Image Reconstruction in Three-Dimensional Optoacoustic Tomography on Graphics Processing Units

GPU-based Monte Carlo radiotherapy dose calculation using phase-space sources

CT to Cone-beam CT Deformable Registration With Simultaneous Intensity Correction

A GPU Tool for Efficient, Accurate, and Realistic Simulation of Cone Beam CT Projections

GPU computing in medical physics: A review

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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