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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

cuSZ: CUDA-Based Error-Bounded Lossy Compressor for Scientific Data

A Novel Memory-Efficient Deep Learning Training Framework via Error-Bounded Lossy Compression

Ginkgo: a high-performance linear algebra library for manycore systems

Ginkgo – A Math Library designed for Platform Portability

GPURepair

GPURepair: Automated Repair of GPU Kernels

Dazmir

Adaptive Data Migration in Load-Imbalanced HPC Applications

ACA-project

Runtime Performances Benchmark for Knowledge Graph Embedding Methods

TornadoVM

Transparent Compiler and Runtime Specializations for Accelerating Managed Languages on FPGAs

AMGCL

AMGCL – A C++ library for efficient solution of large sparse linear systems

Tinker-HP: High Performance Multi-GPUs Massively Parallel Evolution of Tinker

Tinker-HP: Accelerating Molecular Dynamics Simulations of Large Complex Systems with Advanced Point Dipole Polarizable Force Fields using GPUs and Multi-GPUs systems

EngineCL: Usability and Performance in Heterogeneous Computing

Towards Co-execution on Commodity Heterogeneous Systems: Optimizations for Time-Constrained Scenarios

Neural Network Libraries

Out-of-core Training for Extremely Large-Scale Neural Networks With Adaptive Window-Based Scheduling

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2020

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