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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

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KLARAPTOR: A Tool for Dynamically Finding Optimal Kernel Launch Parameters Targeting CUDA Programs

Three Contributions to the Theory and Practice of Optimizing Compilers

HETU: a high-performance distributed deep learning system targeting large-scale and automated distributed training

Galvatron: Efficient Transformer Training over Multiple GPUs Using Automatic Parallelism

SYCL-DNN: a library implementing neural network algorithms written using SYCL

User-Driven Online Kernel Fusion for SYCL

SW#SYCL

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Flink-TornadoVM-Artifact

Challenges and Techniques for Transparent Acceleration of Unmodified Big Data Applications

StateMover: a checkpoint-based debugging framework for FPGAs

Hardware Checkpointing and Productive Debugging Flows for FPGAs

Kernel Tuner

Going green: optimizing GPUs for energy efficiency through model-steered auto-tuning

TorchOpt: an efficient library for differentiable optimization built upon PyTorch

TorchOpt: An Efficient Library for Differentiable Optimization

NaturalCC: An Open-Source Toolkit for Code Intelligence

A Study on Neural-based Code Summarization in Low-resource Settings

mt4g: Memory Topology for GPUs

Capturing the Memory Topology of GPUs

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