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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

HLS Portability from Intel to Xilinx: A Case Study

HEXL: Intel Homomorphic Encryption Acceleration Library

Accelerating Encrypted Computing on Intel GPUs

Taskflow: A General-purpose Parallel and Heterogeneous Task Programming System

Taskflow: A Lightweight Parallel and Heterogeneous Task Graph Computing System

CompilerGym: a library performant reinforcement learning environments for compiler tasks

CompilerGym: Robust, Performant Compiler Optimization Environments for AI Research

HPCToolkit

Measurement and Analysis of GPU-accelerated Applications with HPCToolkit

NVPTX-SPIR-V Translator

Supporting CUDA for an extended RISC-V GPU architecture

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high performance computing on graphics processing units: hgpu.org

MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Optimizing data intensive GPGPU computations for DNA sequence alignment

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