high performance computing on graphics processing units: hgpu.org

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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

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The VOLNA-OP2 Tsunami Code (Version 1.0)

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Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs

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Equalizer 2.0 – Convergence of a Parallel Rendering Framework

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high performance computing on graphics processing units: hgpu.org

MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Optimizing data intensive GPGPU computations for DNA sequence alignment

Recent source codes

DLL: Deep Learning Library (DLL) for C++ (ANNs, CNNs, RBMs, DBNs...)

HCC: Open Source, Optimizing C++ Compiler for Heterogeneous Compute for the ROCm GPU Computing Platform

pynufft: Python non-uniform fast Fourier transform (NUFFT)

MALBEC: a new CUDA-C ray-tracer in General Relativity

Volna-OP2: OP2 port of the original Volna code

CuLDA_CGS: Solving Large-scale LDA Problems on GPUs

MeterPU: Generic Portable Measurement Framework for Multicore CPU and Multi-GPU Systems

GHOST: General, Hybrid and Optimized Sparse Toolkit

Equalizer 2.0: Convergence of a Parallel Rendering Framework

QMCPACK: An open source ab initio Quantum Monte Carlo package for the electronic structure of atoms, molecules, and solids

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International Conference on Biomedicine & Pharmacotherapy, 2018

8th International Workshop on Computer Science and Engineering (WCSE’18), 2018

International Conference on Robotics, Artificial Intelligence, Automation and Mechatronics, 2018

The 3rd IEEE International Conference on Image, Vision and Computing (ICIVC), 2018

The 2th International Conference on Robotics and Automation Sciences (ICRAS), 2018