high performance computing on graphics processing units: hgpu.org

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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

cuFINUFFT: a load-balanced GPU library for general-purpose nonuniform FFTs

KTT - Kernel Tuning Toolkit

Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures

HSA-on-FPGA

Transparent FPGA Acceleration with TensorFlow

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high performance computing on graphics processing units: hgpu.org

MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Optimizing data intensive GPGPU computations for DNA sequence alignment

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cuFINUFFT: a load-balanced GPU library for general-purpose nonuniform FFTs

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International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020