high performance computing on graphics processing units: hgpu.org

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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

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NEPTUNE: Network- and GPU-aware Management of Serverless Functions at the Edge

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Analytical Performance Estimation during Code Generation on Modern GPUs

Celerity HLA: A high-level API on top of Celerity to support functional, C++20 range-adaptors-like patterns

The Celerity High-level API: C++20 for Accelerator Clusters

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CASE: A Compiler-Assisted SchEduling Framework for Multi-GPU Systems

Efficient Execution of OpenMP on GPUs

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See all packages

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high performance computing on graphics processing units: hgpu.org

MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Optimizing data intensive GPGPU computations for DNA sequence alignment

Recent source codes

GPJSON: GPU-based JSON data processing system accessible via all GraalVM languages

NEPTUNE: Network- and GPU-aware management of serverless functions at the edge

HeCBench: a collection of Heterogeneous Computing benchmarks written with CUDA, HIP, SYCL (DPC++), and OpenMP-4.5

cuPSO: GPU Parallelization for Particle Swarm Optimization Algorithms

WARPSPEED: An analytic Data Volume and Performance Estimator for GPU Kernels

Celerity HLA: A high-level API on top of Celerity to support functional, C++20 range-adaptors-like patterns

GPU-Sched

Efficient Execution of OpenMP on GPUs

Explicit Caching HYB based SpMV

matrix_inversion algorithm

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