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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

Watershed analysis algorithm implementation in CUDA and OpenACC

Parallelizing Multiple Flow Accumulation Algorithm using CUDA and OpenACC

OpenCL Performance Prediction using Architecture-Independent Features

Characterizing and Predicting Scientific Workloads for Heterogeneous Computing Systems

PySPH: a Python-based SPH framework

PySPH: a Python-based framework for smoothed particle hydrodynamics

Efficient Interleaved Batch Matrix Solvers for CUDA

Efficient Interleaved Batch Matrix Solvers for CUDA

ArborX: Performance-portable geometric search library

ArborX: A Performance Portable Search Library

FlowSeq: Generative Flow based Sequence-to-Sequence Toolkit

FlowSeq: Non-Autoregressive Conditional Sequence Generation with Generative Flow

Compositional Deep Learning in Futhark

Compositional Deep Learning in Futhark

MLPerf Benchmark Suite

Demystifying the MLPerf Benchmark Suite

stdgpu: Efficient STL-like Data Structures on the GPU

stdgpu: Efficient STL-like Data Structures on the GPU

ikra-cpp: C++ Library for Object-oriented Programming with Structure of Arrays Layout

Memory-Efficient Object-Oriented Programming on GPUs

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2019

May

13-15

Boston, USA

7th International Workshop on OpenCL, 2019

2019

May

13

Boston, MA, USA

Distributed Heterogeneous Programming in C/C++ (DHPCC++), 2019

2019

May

14

Larnaca, Cyprus

3rd International Workshop on Theoretical Approaches to Performance Evaluation, Modeling and Simulation (TAPEMS), 2019

2019

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26-28

Rome, Italy

International Conference on Frontiers of Neural Networks (ICFNN), 2019

2019

July

26-28

Rome, Italy

International Conference on Frontiers of Artificial Intelligence and Machine Learning (FAIML), 2019

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