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MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Usman Roshan

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Tags: Bioinformatics, Biology, CUDA, nVidia, Short read mapping, Smith-Waterman algorithm, Tesla M2050

March 12, 2014 by hgpu

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Abdullah Gharaibeh, Matei Ripeanu

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

February 27, 2011 by hgpu

Optimizing data intensive GPGPU computations for DNA sequence alignment

Cole Trapnell, Michael C. Schatz

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Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce 8800 GTX, Package, Sequence alignment, Short read mapping, Suffix trees

October 30, 2010 by hgpu

Genomics-GPU: A Benchmark Suite for GPU-accelerated Genome Analysis

Dragon-Alpha&cu32: A Java-based Tensor Computing Framework With its High-Performance CUDA Library

Beehive SPIR-V Toolkit

Experiences in Building a Composable and Functional API for Runtime SPIR-V Code Generation

TorchBench: a collection of open source benchmarks used to evaluate PyTorch performance

TorchBench: Benchmarking PyTorch with High API Surface Coverage

Prediction of Performance and Power Consumption of GPGPU Applications

Descend: an attempt at safe imperative GPU programming

Descend: A Safe GPU Systems Programming Language

Redwood heterogeneous framework

Redwood: Flexible and Portable Heterogeneous Tree Traversal Workloads

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high performance computing on graphics processing units: hgpu.org

MaxSSmap: A GPU program for short read mapping with the maximum scoring subsequence

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance

Optimizing data intensive GPGPU computations for DNA sequence alignment

Recent source codes

Genomics-GPU: A Benchmark Suite for GPU-accelerated Genome Analysis

AutoDock for GPUs and other accelerators

spotPython: Sequential Parameter Optimization in Python

Test benchmarks for CELERITY

Dragon-Alpha&cu32: A Java-based Tensor Computing Framework With its High-Performance CUDA Library

Beehive SPIR-V Toolkit

TorchBench: a collection of open source benchmarks used to evaluate PyTorch performance

Prediction of Performance and Power Consumption of GPGPU Applications

Descend: an attempt at safe imperative GPU programming

Redwood heterogeneous framework

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