high performance computing on graphics processing units: hgpu.org

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Efficiency of the energy transfer in the Fenna-Matthews-Olson complex using hierarchical equations on graphics processing units

Christoph Kreisbeck, Tobias Kramer, Mirta Rodriguez, Birgit Hein

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Tags: CUDA, Molecular modeling, nVidia, Physics, Tesla C2050

December 21, 2010 by hgpu

GPU-BLAST: Using graphics processors to accelerate protein sequence alignment

Panagiotis D. Vouzis, Nikolaos V. Sahinidis

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Tags: Bioinformatics, Biology, BLAST, CUDA, nVidia, Package, Sequence alignment, Tesla C2050

November 30, 2010 by hgpu

Large-Scale DNS of Gas-Solid Flow on Mole-8.5

Qingang Xiong, Guofeng Zhou, Bo Li, Ji Xua, Xiaojian Fang, Junwu Wang, Xianfeng He, Xiaowei Wang, Limin Wang, Wei Ge, Jinghai Li

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Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, Physics, Tesla C2050

November 12, 2010 by hgpu

Improved automated lattice perturbation theory in background field gauge

T.C. Hammant, R.R. Horgan, C.J. Monahan, A.G. Hart, E.H. Muller, A. Gray, K. Sivalingham, G.M. von Hippel

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Tags: Computational Physics, CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, Physics, QCD, Tesla C2050

November 12, 2010 by hgpu

An Exploration of OpenCL for a Numerical Relativity Application

Niket K. Choudhary, Rakesh Ginjupalli, Sandeep Navada, Gaurav Khanna

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Tags: Astrophysics, ATI, ATI Radeon HD 5870, Computational Physics, General Relativity and Quantum Cosmology, nVidia, OpenCL, OpenMP, Tesla C2050

November 9, 2010 by hgpu

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Hyung-Jin Kim, Weonjong Lee

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, MPI, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

Implementation of the Neuberger-Dirac operator on GPUs

Bjoern Walk, Hartmut Wittig, Egor Dranischnikow, Elmar Schomer

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Physics, QCD, Tesla C2050

November 9, 2010 by hgpu

Staggered fermions simulations on GPUs

Claudio Bonati, Guido Cossu, Massimo D'Elia, Adriano Di Giacomo

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, Physics, QCD, Tesla C1060, Tesla C2050

November 9, 2010 by hgpu

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Ronald Babich, Michael A. Clark, Balint Joo

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Physics, QCD, Tesla C1060, Tesla C2050, Tesla C870

November 9, 2010 by hgpu

Rank k Cholesky Up/Down-dating on the GPU: gpucholmodV0.2

Christian Walder

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Tags: Algorithms, Computer science, CUDA, nVidia, Package, Tesla C2050

November 9, 2010 by hgpu

Parallel hyperbolic PDE simulation on clusters: Cell versus GPU

Scott Rostrup, Hans De Sterck

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Tags: Cell processor, CUDA, Hyperbolic PDEs, Hyperbolic system, Mathematics, nVidia, Package, Tesla C2050, Tesla T10

November 7, 2010 by hgpu

The Heisenberg spin glass model on GPU: myths and actual facts

M. Bernaschi, G. Parisi, L. Parisi

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Tags: Condensed matter, CUDA, Disordered Systems and Neural Networks, nVidia, nVidia GeForce GTX 480, Package, Physics, Spin Systems, Tesla C1060, Tesla C2050

October 28, 2010 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

Efficiency of the energy transfer in the Fenna-Matthews-Olson complex using hierarchical equations on graphics processing units

GPU-BLAST: Using graphics processors to accelerate protein sequence alignment

Large-Scale DNS of Gas-Solid Flow on Mole-8.5

Improved automated lattice perturbation theory in background field gauge

An Exploration of OpenCL for a Numerical Relativity Application

Multi GPU Performance of Conjugate Gradient Algorithm with Staggered Fermions

Implementation of the Neuberger-Dirac operator on GPUs

Staggered fermions simulations on GPUs

Parallelizing the QUDA Library for Multi-GPU Calculations in Lattice Quantum Chromodynamics

Rank k Cholesky Up/Down-dating on the GPU: gpucholmodV0.2

Parallel hyperbolic PDE simulation on clusters: Cell versus GPU

The Heisenberg spin glass model on GPU: myths and actual facts

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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