high performance computing on graphics processing units: hgpu.org

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QSL Squasher: A Fast Quasi-Separatrix Layer Map Calculator

Svetlin Tassev, Antonia Savcheva

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Tags: AMD FirePro W8100, Astrophysics, ATI, OpenCL, Package, Solar and Stellar Astrophysics

September 8, 2016 by hgpu

Flux tubes at Finite Temperature

Pedro Bicudo, Nuno Cardoso, Marco Cardoso

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Tags: CUDA, High Energy Physics - Lattice, nVidia, Phase transition, Physics, QCD

August 31, 2016 by hgpu

Massively parallel simulations of relativistic fluid dynamics on graphics processing units with CUDA

Dennis Bazow, Ulrich W. Heinz, Michael Strickland

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Tags: Algorithms, Computational Physics, CUDA, Fluid dynamics, High Energy Physics - Phenomenology, Intel Xeon Phi, Nuclear Theory, nVidia, nVidia GeForce GTX 560 M, nVidia GeForce GTX 980 Ti, nVidia GeForce GTX Titan Z, Physics

August 28, 2016 by hgpu

Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs

Christopher P. Stone, Kyle E. Niemeyer

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Tags: Computational Physics, Computer science, Differential equations, Intel Xeon Phi, nVidia, ODEs, OpenCL, Ordinary differential equations, Physics, Tesla K20

August 28, 2016 by hgpu

Co-design of a particle-in-cell plasma simulation code for Intel Xeon Phi: a first look at Knights Landing

Igor Surmin, Sergey Bastrakov, Zakhar Matveev, Evgeny Efimenko, Arkady Gonoskov, Iosif Meyerov

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Tags: Computational Physics, Intel Xeon Phi, OpenMP, Particle-in-cell methods, Physics, Plasma physics

August 8, 2016 by hgpu

3D visualization of astronomy data cubes using immersive displays

Gilles Ferrand, Jayanne English, Pourang Irani

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Tags: Astrophysics, Instrumentation and Methods for Astrophysics, nVidia, OpenGL, Package, Rendering, Virtual reality, Visualization

August 1, 2016 by hgpu

PASSATA – Object oriented numerical simulation software for adaptive optics

G. Agapito, A. Puglisi, S. Esposito

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, Numerical simulation, nVidia, Optics

July 28, 2016 by hgpu

An Optimized Multiple Right-Hand Side Dslash Kernel for Intel Xeon Phi

Aaron Walden

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Tags: High Energy Physics - Lattice, Intel Xeon Phi, Physics, QCD, Thesis

July 28, 2016 by hgpu

THOR: A New and Flexible Global Circulation Model to Explore Planetary Atmospheres

Joao M. Mendonca, Simon L. Grimm, Luc Grosheintz, Kevin Heng

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Tags: Astrophysics, CUDA, Earth and Planetary Astrophysics, Earth and Space Sciences, nVidia, Tesla K20

July 20, 2016 by hgpu

A Kinetic Vlasov Model for Plasma Simulation Using Discontinuous Galerkin Method on Many-Core Architectures

Noah Reddell

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Tags: OpenCL, Physics, Plasma physics, Thesis

July 18, 2016 by hgpu

An investigation of GPU-based stiff chemical kinetics integration methods

Nicholas J. Curtis, Kyle E. Niemeyer, Chih-Jen Sung

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Tags: Algorithms, Chemistry, Computational Physics, CUDA, nVidia, Physics, Tesla C2075

July 16, 2016 by hgpu

GPU Accelerated Discrete Element Method (DEM) Molecular Dynamics for Conservative, Faceted Particle Simulations

Matthew Spellings, Ryan L. Marson, Joshua A. Anderson, Sharon C. Glotzer

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Tags: Computational Physics, CUDA, Molecular dynamics, nVidia, nVidia Quadro M 6000, Package, Particle simulation, Physics

July 13, 2016 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

QSL Squasher: A Fast Quasi-Separatrix Layer Map Calculator

Flux tubes at Finite Temperature

Massively parallel simulations of relativistic fluid dynamics on graphics processing units with CUDA

Accelerating finite-rate chemical kinetics with coprocessors: comparing vectorization methods on GPUs, MICs, and CPUs

Co-design of a particle-in-cell plasma simulation code for Intel Xeon Phi: a first look at Knights Landing

3D visualization of astronomy data cubes using immersive displays

PASSATA – Object oriented numerical simulation software for adaptive optics

An Optimized Multiple Right-Hand Side Dslash Kernel for Intel Xeon Phi

THOR: A New and Flexible Global Circulation Model to Explore Planetary Atmospheres

A Kinetic Vlasov Model for Plasma Simulation Using Discontinuous Galerkin Method on Many-Core Architectures

An investigation of GPU-based stiff chemical kinetics integration methods

GPU Accelerated Discrete Element Method (DEM) Molecular Dynamics for Conservative, Faceted Particle Simulations

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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