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SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk of genetic epistasis in bipolar disorder

Xiaohan Hu, Qiang Liu, Zhao Zhang, Zhiqiang Li, Shilin Wang, Lin He, Yongyong Shi

Tags: Bioinformatics, Biology, Genetics

November 17, 2010 by hgpu

Alignator: A GPU powered software package for robust fiducial-less alignment of cryo tilt-series

Daniel Castano-Diez, Margot Scheffer, Ashraf Al-Amoudi, Achilleas S. Frangakis

Tags: Biology, Cryo-electron tomography, Image alignment, Image processing

November 17, 2010 by hgpu

Accelerating the reduction to upper Hessenberg, tridiagonal, and bidiagonal forms through hybrid GPU-based computing

Stanimire Tomov, Rajib Nath, Jack Dongarra

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Source codes

Tags: BLAS, Computer science, CUBLAS, CUDA, Linear Algebra, nVidia, nVidia GeForce GTX 280, Package

November 17, 2010 by hgpu

Direct numerical simulation of sub-grid structures in gas-solid flow — GPU implementation of macro-scale pseudo-particle modeling

Qingang Xiong, Bo Li, Feiguo Chen, Jingsen Ma, Wei Ge, Jinghai Li

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Tags: Chemistry, Fluid dynamics, Navier-Stokes equations, NSEs, nVidia

November 17, 2010 by hgpu

A multi-GPU accelerated solver for the three-dimensional two-phase incompressible Navier-Stokes equations

Michael Griebel, Peter Zaspel

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Tags: CUDA, Fluid dynamics, MPI, Navier-Stokes equations, NSEs, nVidia, Tesla S1070

November 17, 2010 by hgpu

Fast Bio-Inspired Computation using a GPU-based Systemic Computer

Marjan Rouhipour, Peter J. Bentley, Hooman Shayani

Tags: Biology

November 16, 2010 by hgpu

Domain Decomposition method on GPU cluster

Yusuke Osaki, Ken-Ichi Ishikawa

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Tags: CUDA, GPU cluster, High Energy Physics - Lattice, Mathematical Software, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMPI, Physics, QCD

November 16, 2010 by hgpu

Real-time nonlinear finite element computations on GPU – Application to neurosurgical simulation

Grand R. Joldes, Adam Wittek, Karol Miller

Tags: CUDA, Medicine, nVidia, Surgical simulation

November 16, 2010 by hgpu

Illustrative Volume Visualization Using GPU-Based Particle Systems

Roy van Pelt, Anna Vilanova, Huub van de Wetering

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Tags: Computer science, GLSL, nVidia, nVidia GeForce 8800 GTX, OpenGL, Rendering, Visualization

November 16, 2010 by hgpu

GPU-based smart visibility techniques for tumor surgery planning

Christoph Kubisch, Christian Tietjen, Bernhard Preim

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Tags: Cg, Medicine, nVidia, nVidia GeForce 9600 GT, OpenGL, Rendering, Visualization

November 16, 2010 by hgpu

GPU rendering for tiled multi-projector autostereoscopic display based on chromium

Jianli Luo, Kaihuai Qin, Yanxia Zhou, Miao Mao, Ruirui Li

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Tags: 3D Graphics and Realism, Computer science, nVidia, nVidia GeForce 9600 GT, OpenGL, Rendering

November 16, 2010 by hgpu

Multi-scale neural texture classification using the GPU as a stream processing engine

M. Martinez-Zarzuela, F. Diaz-Pernas, M. Anton-Rodriguez, J. Diez-Higuera, D. Gonzalez-Ortega, D. Boto-Giralda, F. Lopez-Gonzalez, I. De La Torre

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Tags: Cg, Computer science, nVidia, nVidia GeForce 8800 GTX, OpenGL, Texture detection

November 16, 2010 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

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high performance computing on graphics processing units: hgpu.org

Applications

SHEsisEpi, a GPU-enhanced genome-wide SNP-SNP interaction scanning algorithm, efficiently reveals the risk of genetic epistasis in bipolar disorder

Alignator: A GPU powered software package for robust fiducial-less alignment of cryo tilt-series

Accelerating the reduction to upper Hessenberg, tridiagonal, and bidiagonal forms through hybrid GPU-based computing

Direct numerical simulation of sub-grid structures in gas-solid flow — GPU implementation of macro-scale pseudo-particle modeling

A multi-GPU accelerated solver for the three-dimensional two-phase incompressible Navier-Stokes equations

Fast Bio-Inspired Computation using a GPU-based Systemic Computer

Domain Decomposition method on GPU cluster

Real-time nonlinear finite element computations on GPU – Application to neurosurgical simulation

Illustrative Volume Visualization Using GPU-Based Particle Systems

GPU-based smart visibility techniques for tumor surgery planning

GPU rendering for tiled multi-projector autostereoscopic display based on chromium

Multi-scale neural texture classification using the GPU as a stream processing engine

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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