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High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing

I. Buch, M. J. Harvey, T. Giorgino, D. P. Anderson, G. De Fabritiis

Tags: Biochemistry, Chemistry, Molecular dynamics, Thermodynamics

November 6, 2010 by hgpu

A GPU implementation for LBG and SOM training

Yi Xiao, Chi Leung, Tze-Yui Ho, Ping-Man Lam

Tags: Computer science, Neural Computing, Self-organizing map, Vector quantization

November 6, 2010 by hgpu

A matrix approach to tomographic reconstruction and its implementation on GPUs

F. Vazquez, E. M. Garzon, J. J. Fernandez

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Tags: Biology, Image processing, Sparse matrix

November 6, 2010 by hgpu

Exploring the multiple-GPU design space

Dana Schaa, David Kaeli

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce 8800 GTX

November 6, 2010 by hgpu

GPU Computing for Atmospheric Modeling

Rory Kelly

Tags: CUDA, Earth and Space Sciences, nVidia

November 6, 2010 by hgpu

A Practical Quicksort Algorithm for Graphics Processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Sorting

November 6, 2010 by hgpu

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Samer Al-Kiswany, Abdullah Gharaibeh, Elizeu Santos-Neto, George Yuan, Matei Ripeanu

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Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 9800 GTX, Package, Storage system

November 6, 2010 by hgpu

Programming model for a heterogeneous x86 platform

Bratin Saha, Xiaocheng Zhou, Hu Chen, Ying Gao, Shoumeng Yan, Mohan Rajagopalan, Jesse Fang, Peinan Zhang, Ronny Ronen, Avi Mendelson

Tags: Computer science, Distributed data structures, Programming techniques

November 6, 2010 by hgpu

Maintaining constant frame rates in 3D texture-based volume rendering

D. Weiskopf, M. Weiler, T. Ertl

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Tags: 3D Graphics and Realism, ATI, ATI Radeon 9800 Pro, Computer science, nVidia, nVidia GeForce FX 5950 Ultra, OpenGL, Raytracing, Rendering

November 6, 2010 by hgpu

Accelerating Dust Temperature Calculations with Graphics Processing Units

Patrik Jonsson, Joel Primack

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Tags: Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, nVidia, Package, Physics, Tesla C1060

November 6, 2010 by hgpu

Fast scale invariant feature detection and matching on programmable graphics hardware

Nico Cornelis, Luc Van Gool

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8800 GTX

November 6, 2010 by hgpu

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing

A GPU implementation for LBG and SOM training

A matrix approach to tomographic reconstruction and its implementation on GPUs

Exploring the multiple-GPU design space

GPU Computing for Atmospheric Modeling

A Practical Quicksort Algorithm for Graphics Processors

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Programming model for a heterogeneous x86 platform

Maintaining constant frame rates in 3D texture-based volume rendering

Accelerating Dust Temperature Calculations with Graphics Processing Units

Fast scale invariant feature detection and matching on programmable graphics hardware

Recent source codes

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

ROCm's implementation of Gromacs

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

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