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MrBayes on a Graphics Processing Unit

Jianfu Zhou, Xiaoguang Liu, Douglas S. Stones, Qiang Xie, Gang Wang

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Tags: Bayesian, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 480, Package

March 18, 2011 by hgpu

2D and 3D level-set algorithms on GPU

G. J. Tornai, G. Cserey

Tags: Algorithms, Computer science, Computer vision

March 18, 2011 by hgpu

Directionally Unsplit Hydrodynamic Schemes with Hybrid MPI/OpenMP/GPU Parallelization in AMR

Hsi-Yu Schive, Ui-Han Zhang, Tzihong Chiueh

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Tags: Astrophysics, CUDA, GPU cluster, Instrumentation and Methods for Astrophysics, MPI, nVidia, OpenMP, Tesla C2050

March 18, 2011 by hgpu

Accelerated ray tracing for radiotherapy dose calculations on a GPU

M. De Greef, J. Crezee, J. C. Van Eijk, R. Pool, A. Bel

Tags: Computed tomography, CT, CUDA, Image processing, Medicine, nVidia, Radiotherapy

March 17, 2011 by hgpu

Task Scheduling of Parallel Processing in CPU-GPU Collaborative Environment

Lei Wang, Yong-Zhong Huang, Xin Chen, Chun-Yan Zhang

Tags: Algorithms, Computer science, nVidia, nVidia GeForce 7600 GT, Task scheduling

March 17, 2011 by hgpu

Language virtualization for heterogeneous parallel computing

Hassan Chafi, Zach DeVito, Adriaan Moors, Tiark Rompf, Arvind K. Sujeeth, Pat Hanrahan, Martin Odersky, Kunle Olukotun

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Tags: Algorithms, Code generation, Computer science, Heterogeneous systems, High-level Languages

March 17, 2011 by hgpu

Implementation of algorithms with a fine-grained parallelism on GPUs

K. Kalgin

Tags: Algorithms, Cellular automata, Computer science, CUDA, nVidia, Programming techniques

March 17, 2011 by hgpu

RDMA-Based Job Migration Framework for MPI over InfiniBand

Xiangyong Ouyang, Sonya Marcarelli, Raghunath Rajach, K. P. Dhabaleswar

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Tags: Algorithms, Computer science, MPI

March 17, 2011 by hgpu

Live, Video-Rate Super-Resolution Microscopy Using Structured Illumination and Rapid GPU-Based Parallel Processing

Jonathan Lefman, Keana Scott, Stephan Stranick

Tags: Computer science, CUDA, Microscopy, nVidia

March 17, 2011 by hgpu

Performance analysis of single-phase, multiphase, and multicomponent lattice-Boltzmann fluid flow simulations on GPU clusters

J. Myre, S. D. C. Walsh, D. Lilja, M. O. Saar

Tags: CUDA, Fluid dynamics, Lattice Boltzmann model, nVidia, OpenMP, Performance

March 17, 2011 by hgpu

Memory-Scalable GPU Spatial Hierarchy Construction

Qiming Hou, Xin Sun, Kun Zhou, Christian Lauterbach, Dinesh Manocha, Baining Guo

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Tags: Computer science, CUDA, KD-tree, Memory, nVidia, nVidia GeForce GTX 280

March 17, 2011 by hgpu

CUDA Compatible GPU as an Efficient Hardware Accelerator for AES Cryptography

Svetlin A. Manavski

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Tags: AES, ATI, ATI Radeon X1900, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTX, OpenGL, Security

March 17, 2011 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

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high performance computing on graphics processing units: hgpu.org

Applications

MrBayes on a Graphics Processing Unit

2D and 3D level-set algorithms on GPU

Directionally Unsplit Hydrodynamic Schemes with Hybrid MPI/OpenMP/GPU Parallelization in AMR

Accelerated ray tracing for radiotherapy dose calculations on a GPU

Task Scheduling of Parallel Processing in CPU-GPU Collaborative Environment

Language virtualization for heterogeneous parallel computing

Implementation of algorithms with a fine-grained parallelism on GPUs

RDMA-Based Job Migration Framework for MPI over InfiniBand

Live, Video-Rate Super-Resolution Microscopy Using Structured Illumination and Rapid GPU-Based Parallel Processing

Performance analysis of single-phase, multiphase, and multicomponent lattice-Boltzmann fluid flow simulations on GPU clusters

Memory-Scalable GPU Spatial Hierarchy Construction

CUDA Compatible GPU as an Efficient Hardware Accelerator for AES Cryptography

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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