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Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline

Andrew W. Dowsey, Michael J. Dunn, Guang-Zhong Z. Yang

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Tags: Bioinformatics, Biology, Cg, Image alignment, nVidia, nVidia GeForce 6800 Ultra, Package

January 11, 2011 by hgpu

Exploring new architectures in accelerating CFD for Air Force applications

Jack Dongarra, Shirley Moore, Gregory Peterson, Stanimire Tomov

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Tags: Algorithms, Fluid dynamics, FPGA, nVidia, nVidia Quadro FX 5600, Tesla T10P

January 11, 2011 by hgpu

An events based algorithm for distributing concurrent tasks on multi-core architectures

David W. Holmes, John R. Williams, Peter Tilke

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Tags: Algorithms, Computer science, Performance, Task scheduling

January 11, 2011 by hgpu

Diagnosis, Tuning, and Redesign for Multicore Performance: A Case Study of the Fast Multipole Method

Aparna Chandramowlishwarany, Kamesh Madduri, Richard Vuduc

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Tags: Computer science, Fast multipole method, Optimization, Performance

January 11, 2011 by hgpu

Efficient gradient-domain compositing using quadtrees

Aseem Agarwala

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Tags: Algorithms, Filtering, Image processing

January 11, 2011 by hgpu

SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach

N. Sanna, I. Baccarelli, G. Morelli

Tags: Biology, Chemistry, CUDA, Molecular modeling, nVidia

January 11, 2011 by hgpu

iNFAnt: NFA pattern matching on GPGPU devices

Niccolo' Cascarano, Pierluigi Rolando, Fulvio Risso, Riccardo Sisto

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Tags: Computer science, CUDA, Networks, nVidia, nVidia GeForce GTX 260, String matching

January 11, 2011 by hgpu

Accelerating linpack with CUDA on heterogenous clusters

Massimiliano Fatica

Tags: Computer science, CUDA, GPU cluster, Linear Algebra, nVidia

January 11, 2011 by hgpu

FCUDA: Enabling Efficient Compilation of CUDA Kernels onto FPGAs

Ros Papakonstantinou, Karthik Gururaj, John A. Stratton, Deming Chen, Jason Cong, Wen-mei W. Hwu

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Tags: Compilers, Computer science, CUDA, FPGA, High-level Languages

January 11, 2011 by hgpu

CUDA-based real time surgery simulation

Youquan Liu, Suvranu De

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Tags: CUDA, Medicine, nVidia, nVidia GeForce 8800 GTX, Surgical simulation

January 11, 2011 by hgpu

Fast binding site mapping using GPUs and CUDA

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, Tesla C1060

January 11, 2011 by hgpu

High-performance CUDA kernel execution on FPGAs

Alexandros Papakonstantinou, Karthik Gururaj, John A. Stratton, Deming Chen, Jason Cong, Wen Mei

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Tags: Computer science, CUDA, FPGA, Performance, Programming techniques

January 11, 2011 by hgpu

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline

Exploring new architectures in accelerating CFD for Air Force applications

An events based algorithm for distributing concurrent tasks on multi-core architectures

Diagnosis, Tuning, and Redesign for Multicore Performance: A Case Study of the Fast Multipole Method

Efficient gradient-domain compositing using quadtrees

SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach

iNFAnt: NFA pattern matching on GPGPU devices

Accelerating linpack with CUDA on heterogenous clusters

FCUDA: Enabling Efficient Compilation of CUDA Kernels onto FPGAs

CUDA-based real time surgery simulation

Fast binding site mapping using GPUs and CUDA

High-performance CUDA kernel execution on FPGAs

Recent source codes

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

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