high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications » Medicine

Fast, Accurate and Shift-Varying Line Projections for Iterative Reconstruction Using the GPU

Guillem Pratx, Garry Chinn, Peter D. Olcott, Craig S. Levin

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Tags: Cg, Image reconstruction, Medicine, nVidia, nVidia GeForce 8800 GT, OpenGL, PET, Tomography

April 29, 2011 by hgpu

Petascale Direct Numerical Simulation of Blood Flow on 200K Cores and Heterogeneous Architectures

Abtin Rahimian, Ilya Lashuk, Shravan Veerapaneni, Aparna Chandramowlishwaran, Dhairya Malhotra, Logan Moon, Rahul Sampath, Aashay Shringarpure, Jeffrey Vetter, Richard Vuduc, Denis Zorin, George Biros

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Tags: CUDA, Fluid dynamics, GPU cluster, Medicine, MPI, N-body simulation, nVidia, Tesla S1070

April 28, 2011 by hgpu

Fully GPU based real time corrections and reconstruction for cone beam micro CT

G. Jakab, A. Racz, P. Major, T. Bukki, G. Nemeth

Tags: Computed tomography, CT, Image processing, Image reconstruction, Medicine

April 27, 2011 by hgpu

Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma

Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Umit Catalyurek, Joel Saltz, Metin Gurcan

Tags: Algorithms, Bioinformatics, Image processing, Medicine

April 26, 2011 by hgpu

Making Human Connectome Faster: GPU Acceleration of Brain Network Analysis

Di Wu, Tianji Wu, Yi Shan, Yu Wang, Yong He, Ningyi Xu, Huazhong Yang

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Tags: ATI, ATI IL, ATI Radeon HD 5870, ATI Stream, Medicine, Neurons and Cognition, Neuroscience

April 26, 2011 by hgpu

Performance Analysis of a New Real-Time Elastographic Time Constant Estimator

S.P. Nair, Xu Yang, T.A. Krouskop, R. Righetti

Tags: Algorithms, Image processing, Medicine

April 26, 2011 by hgpu

Research on ATI-CAL for accelerating FBP reconstruction

Yajie Wang, Tao Feng, Le Shen, Yuxiang Xing

Tags: ATI, ATI CAL, ATI Radeon HD 4870, ATI Stream, Computed tomography, CT, Image reconstruction, Medicine

April 26, 2011 by hgpu

A real time Breast Microwave Radar imaging reconstruction technique using simt based interpolation

Daniel Flores-Tapia, Stephen Pistorius

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Tags: Algorithms, CUDA, Image processing, Image reconstruction, Magnetic resonance imaging, Medicine, MRI, nVidia

April 25, 2011 by hgpu

Practical craniofacial surgery simulator based on GPU accelerated lattice shape matching

Sheng-Hui Liao, Yixiong Liang, Ling-Zhi Li, Bei-Ji Zou, Xing-Hao Zhu, Wei Ai

Tags: Computed tomography, CT, Medicine, Surgical simulation

April 25, 2011 by hgpu

Software-Based Algorithm for Modeling and Correction of Gradient Nonlinearity Distortions in Magnetic Resonance Imaging

Tom S. Lee, Keith E. Schubert, Reinhard W. Schulte

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Tags: Algorithms, CUDA, Image processing, Medicine, MRI, nVidia

April 23, 2011 by hgpu

A GPU-based calculation using the three-dimensional FDTD method for electromagnetic field analysis

T. Nagaoka, S. Watanabe

Tags: CUDA, Electrodynamics, FDTD, Finite-difference time-domain, Medicine, nVidia, Tesla C1060

April 20, 2011 by hgpu

Accelerating spatial clustering detection of epidemic disease with graphics processing unit

Sisi Zhao, Chenghu Zhou

Tags: CUDA, Earth and Space Sciences, Medicine, Monte Carlo simulation, nVidia

April 14, 2011 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Fast, Accurate and Shift-Varying Line Projections for Iterative Reconstruction Using the GPU

Petascale Direct Numerical Simulation of Blood Flow on 200K Cores and Heterogeneous Architectures

Fully GPU based real time corrections and reconstruction for cone beam micro CT

Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma

Making Human Connectome Faster: GPU Acceleration of Brain Network Analysis

Performance Analysis of a New Real-Time Elastographic Time Constant Estimator

Research on ATI-CAL for accelerating FBP reconstruction

A real time Breast Microwave Radar imaging reconstruction technique using simt based interpolation

Practical craniofacial surgery simulator based on GPU accelerated lattice shape matching

Software-Based Algorithm for Modeling and Correction of Gradient Nonlinearity Distortions in Magnetic Resonance Imaging

A GPU-based calculation using the three-dimensional FDTD method for electromagnetic field analysis

Accelerating spatial clustering detection of epidemic disease with graphics processing unit

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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