high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications » Medicine

Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS

Nicholas A. Davis, Ahwan Pandey, B. A. McKinney

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Tags: Bioinformatics, Biology, CUDA, Genetics, Medicine, nVidia, Package, Tesla M1060

December 13, 2010 by hgpu

The integrated implementation of surgical simulations through modeling by means of imaging, comprehension, visualization, deformation, and collision detection in virtual environments

Sinan Kockara

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Tags: Collision detection, Computer science, Medicine, Surgical simulation, Thesis, Visualization

December 13, 2010 by hgpu

Cartesian SENSE and k-t SENSE reconstruction using commodity graphics hardware

Michael S. Hansen, David Atkinson, Thomas S. Sorensen

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Tags: Image processing, Image reconstruction, Magnetic resonance imaging, Medicine, MRI

December 12, 2010 by hgpu

Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model

Hans de Visser, Olivier Comas, David Conlan, Sebastien Ourselin, Josh Passenger, Olivier Salvado

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Tags: Computed tomography, CT, CUDA, Image processing, Medicine, nVidia, nVidia GeForce 8800 GTX

December 12, 2010 by hgpu

Towards systematic exploration of tradeoffs for medical image registration on heterogeneous platforms

W. Plishker, O. Dandekar, S. S. Bhattacharyya, R. Shekhar

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Tags: Computed tomography, CT, CUDA, Image processing, Image registration, Medicine, nVidia, nVidia GeForce 8800 GTX

December 12, 2010 by hgpu

Exploring Parallel Algorithms for Volumetric Mass-Spring-Damper Models in CUDA

Allan Rasmusson, Jesper Mosegaard, Thomas S. Sorensen

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Tags: Biology, CUDA, Medicine, nVidia, nVidia GeForce 8800 GTX

December 12, 2010 by hgpu

The visible ear surgery simulator

Peter Trier, Karsten O. Noe, Mads S. Sorensen, Jesper Mosegaard

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Tags: Medicine, nVidia, nVidia GeForce 8800 GTX, OpenGL, Rendering, Surgical simulation, Visualization

December 12, 2010 by hgpu

High performance computing for deformable image registration: Towards a new paradigm in adaptive radiotherapy

Sanjiv S. Samant, Junyi Xia, P, John D. Owens

Tags: Biology, Computed tomography, CT, CUDA, Image reconstruction, Image registration, Medicine, nVidia, nVidia GeForce 8800 GTX, Radiotherapy

December 11, 2010 by hgpu

Real-time stereographic rendering and display of medical images with programmable GPUs

Xiao Hui H. Wang, Walter F. Good

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Tags: Computed tomography, CT, Image processing, Medicine, nVidia, nVidia Quadro FX 1100, OpenGL, Real-time graphics, Rendering

December 11, 2010 by hgpu

The impact of accelerator processors for high-throughput molecular modeling and simulation

G. Giupponi, M. Harvey, G. Defabritiis

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Tags: Bioinformatics, Cell processor, Chemistry, Medicine, Molecular modeling, nVidia, Review

December 11, 2010 by hgpu

Biomedical image analysis on a cooperative cluster of GPUs and multicores

Timothy D.R. Hartley, Umit Catalyurek, Antonio Ruiz, Francisco Igual, Rafael Mayo, Manuel Ujaldon

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Tags: CUDA, Image processing, Medicine, nVidia, nVidia Quadro FX 5600

December 10, 2010 by hgpu

Real-Time Simulation of Medical Ultrasound from CT Images

Ramtin Shams, Richard Hartley, Nassir Navab

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Tags: Algorithms, Computed tomography, CT, Image processing, Medicine, Ultrasound

December 10, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Applications

Real-world comparison of CPU and GPU implementations of SNPrank: a network analysis tool for GWAS

The integrated implementation of surgical simulations through modeling by means of imaging, comprehension, visualization, deformation, and collision detection in virtual environments

Cartesian SENSE and k-t SENSE reconstruction using commodity graphics hardware

Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model

Towards systematic exploration of tradeoffs for medical image registration on heterogeneous platforms

Exploring Parallel Algorithms for Volumetric Mass-Spring-Damper Models in CUDA

The visible ear surgery simulator

High performance computing for deformable image registration: Towards a new paradigm in adaptive radiotherapy

Real-time stereographic rendering and display of medical images with programmable GPUs

The impact of accelerator processors for high-throughput molecular modeling and simulation

Biomedical image analysis on a cooperative cluster of GPUs and multicores

Real-Time Simulation of Medical Ultrasound from CT Images

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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