high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

GPU-based spatial interaction force simulation

Chris Truszkowski, Benjamin Bishop

Tags: Computer science

October 27, 2010 by hgpu

GPU acceleration of a production molecular docking code

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biophysics, Chemistry, FPGA, Molecular dynamics, nVidia, Tesla C1060

October 27, 2010 by hgpu

Techniques for efficient DCT/IDCT implementation on generic GPU

Bo Fang, Guobin Shen, Shipeng Li, Huifang Chen

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Tags: ATI, ATI Radeon 9700 Pro, Computer science, HLSL, Image processing

October 27, 2010 by hgpu

GPU accelerated molecular dynamics simulation of thermal conductivities

Juekuan Yang, Yujuan Wang, Yunfei Chen

Tags: Computational Physics, Molecular dynamics, nVidia, Physics

October 27, 2010 by hgpu

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

M. J. Harvey, G. Giupponi, G. De Fabritiis

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Tags: Biological Physics, Chemistry, Computational Physics, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

Monte Carlo simulations on Graphics Processing Units

Vadim Demchik, Alexei Strelchenko

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Tags: ATI, ATI IL, ATI Radeon HD 4850, ATI Radeon HD 4870, ATI Stream, High Energy Physics - Lattice, Monte Carlo simulation, Physics

October 27, 2010 by hgpu

GPU Cluster for High Performance Computing

Zhe Fan, Feng Qiu, A. Kaufman, S. Yoakum-Stover

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Tags: Computer science, Fluid dynamics, GPU cluster, Lattice Boltzmann model, nVidia, nVidia GeForce FX 5800 Ultra

October 27, 2010 by hgpu

GPU Gems 3

Hubert Nguyen

Tags: Book, Computer science, nVidia, Programming techniques

October 27, 2010 by hgpu

Fast fluid dynamics simulation on the GPU

Mark Harris

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Source codes

Tags: Cg, Computer science, Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, Package, Programming techniques

October 27, 2010 by hgpu

Simulating spin models on GPU

Martin Weigel

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Source codes

Tags: CUDA, Ising model, Monte Carlo simulation, nVidia, Package, Physics, Statistical Mechanics, Tesla C1060

October 27, 2010 by hgpu

Getting Started with GPU Programming

Michael A. Gray

Tags: Computer science, Macintosh, nVidia, Tutorial

October 27, 2010 by hgpu

GPU implementation of JPEG XR

Ming C. Che, Jie Liang

Tags: Algorithms, Computer science, CUDA, Image processing, nVidia

October 27, 2010 by hgpu

Faial: finds bugs in CUDA kernels

Sound and Partially-Complete Static Analysis of Data-Races in GPU Programs

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

UVaFTLE: Lagrangian finite time Lyapunov exponent extraction for fluid dynamic applications

Challenging Portability Paradigms: FPGA Acceleration Using SYCL and OpenCL

HPCToolkit

Refining HPCToolkit for application performance analysis at exascale

Open Catalog of Best Practices for Modernization and Optimization

Optimizing the Weather Research and Forecasting Model with OpenMP Offload and Codee

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high performance computing on graphics processing units: hgpu.org

Applications

GPU-based spatial interaction force simulation

GPU acceleration of a production molecular docking code

Techniques for efficient DCT/IDCT implementation on generic GPU

GPU accelerated molecular dynamics simulation of thermal conductivities

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

Monte Carlo simulations on Graphics Processing Units

GPU Cluster for High Performance Computing

GPU Gems 3

Fast fluid dynamics simulation on the GPU

Simulating spin models on GPU

Getting Started with GPU Programming

GPU implementation of JPEG XR

Recent source codes

Faial: finds bugs in CUDA kernels

Effects of OpenCL-Based Parallelization Methods on Explicit Numerical Methods to Solve the Heat Equation

Intel® SHMEM: Device initiated shared memory based communication library

miniLB: Lattice Botlzmann miniapp w/SYCL

AFOCL

2domination

MFC: Exascale simulation of multiphase/physics fluid dynamics

UVaFTLE: Lagrangian finite time Lyapunov exponent extraction for fluid dynamic applications

HPCToolkit

Open Catalog of Best Practices for Modernization and Optimization

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