high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

OpenOF: Framework for Sparse Non-linear Least Squares Optimization on a GPU

Cornelius Wefelscheid, Olaf Hellwich

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce GTX 570, Optimization, Package, Python

March 2, 2013 by hgpu

Acceleration of the MMFF94 routines within OpenBabel using Eigen and OpenCL

Omar Valerio Minero

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Tags: Chemistry, Molecular modeling, OpenCL, Package, Thesis

February 28, 2013 by hgpu

SOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner

Ruibang Luo, Thomas Wong, Jianqiao Zhu, Chi-Man Liu, Edward Wu, Lap-Kei Lee, Haoxiang Lin, Wenjuan Zhu, David W. Cheung, Hing-Fung Ting, Siu-Ming Yiu, Chang Yu, Yingrui Li, Ruiqiang Li, Tak-Wah Lam

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package, Tesla C2070, Tesla M2050

February 25, 2013 by hgpu

Graphics Card as a Cheap Supercomputer

Jan Prikryl

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 275, Overview, Package

February 25, 2013 by hgpu

Scheduling a Parallel Sparse Direct Solver to Multiple GPUs

Kyungjoo Kim

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Tags: Computer science, CUDA, Factorization, FEM, Finite element method, Heterogeneous systems, nVidia, Package, Sparse direct solvers, Task scheduling, Tesla M2070

February 21, 2013 by hgpu

Chrono: a parallel multi-physics library for rigid-body, flexible-body, and fluid dynamics

H. Mazhar, T. Heyn, A. Pazouki, D. Melanz, A. Seidl, A. Bartholomew, A. Tasora, D. Negrut

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Tags: CUDA, Fluid dynamics, nVidia, Package, Physics, Visualization

February 21, 2013 by hgpu

ClusCo: clustering and comparison of protein models

Jamroz Michal, Kolinski Andrzej

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Tags: Biology, Biomolecules, Clustering, Computational Engineering, CUDA, Finance, nVidia, nVidia GeForce GTX 470, Package

February 20, 2013 by hgpu

Massively Parallel Computing in Economics

Eric M. Aldrich

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Tags: CUDA, Finance, nVidia, Package, Review, Stochastic simulation, Tesla C2075

February 15, 2013 by hgpu

Developing Performance-Portable Molecular Dynamics Kernels in OpenCL

S. J. Pennycook, S. A. Jarvis

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Tags: ATI, ATI FirePro V7800, ATI Radeon HD 6550, Benchmarking, Computer science, Molecular dynamics, nVidia, nVidia GeForce GTX 680, OpenCL, Package, Performance, Tesla C1060, Tesla C2050

February 14, 2013 by hgpu

A multi-lane traffic simulation model via continuous cellular automata

Emanuele Rodaro, Oznur Yeldan

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Tags: Cellular automata, Computer science, CUDA, nVidia, nVidia GeForce GT 555 M, Package, Python

February 9, 2013 by hgpu

Betweenness Centrality on GPUs and Heterogeneous Architectures

Ahmet Erdem Sariyuce, Kamer Kaya, Erik Saule, Umit V. Catalyurek

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Tags: Computer science, CUDA, Graph theory, Heterogeneous systems, nVidia, Package, Tesla C2050, Virtualization

February 7, 2013 by hgpu

Binary Interval Search: a scalable algorithm for counting interval intersections

Ryan M. Layer, Kevin Skadron, Gabriel Robins, Ira M. Hall, Aaron R. Quinlan

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Tags: Algorithms, Bioinformatics, Biology, Computer science, CUDA, Monte Carlo simulation, nVidia, Package, Sequence alignment

February 6, 2013 by hgpu

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

Block: Balancing Load in LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

SIGMo: High-Throughput Batched Subgraph Isomorphism on GPUs for Molecular Matching

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

DGEMM without FP64 Arithmetic – using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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high performance computing on graphics processing units: hgpu.org

Applications

OpenOF: Framework for Sparse Non-linear Least Squares Optimization on a GPU

Acceleration of the MMFF94 routines within OpenBabel using Eigen and OpenCL

SOAP3-dp: Fast, Accurate and Sensitive GPU-based Short Read Aligner

Graphics Card as a Cheap Supercomputer

Scheduling a Parallel Sparse Direct Solver to Multiple GPUs

Chrono: a parallel multi-physics library for rigid-body, flexible-body, and fluid dynamics

ClusCo: clustering and comparison of protein models

Massively Parallel Computing in Economics

Developing Performance-Portable Molecular Dynamics Kernels in OpenCL

A multi-lane traffic simulation model via continuous cellular automata

Betweenness Centrality on GPUs and Heterogeneous Architectures

Binary Interval Search: a scalable algorithm for counting interval intersections

Recent source codes

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

SIGMo: Scalable Isomorphism Graph Matching on GPUs

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

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