high performance computing on graphics processing units: hgpu.org

Packages

hgpu.org » Applications

A GPU-Accelerated Algorithm for Self-Organizing Maps in a Distributed Environment

Peter Wittek, Sandor Daranyi

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Tags: Algorithms, Computer science, CUDA, MapReduce, nVidia, Package, Self-organizing map, Tesla M2050

May 10, 2012 by hgpu

GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

Shuji Suzuki, Takashi Ishida, Ken Kurokawa, Yutaka Akiyama

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Tags: Algorithms, Biology, CUDA, Databases, Next-Generation sequencing, nVidia, Package, Tesla S1070

May 10, 2012 by hgpu

A Fair Comparison of Modern CPUs and GPUs Running the Genetic Algorithm under the Knapsack Benchmark

Jiri Jaros, Petr Pospichal

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Genetic programming, nVidia, nVidia GeForce GTX 580, Package, Performance

May 2, 2012 by hgpu

Diderot: A Parallel DSL for Image Analysis and Visualization

Charisee Chiw, Gordon Kindlmann, John Reppy, Lamont Samuels, Nick Seltzer

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Tags: Image processing, nVidia, OpenCL, Package, Programming Languages, Visualization

May 2, 2012 by hgpu

GPU Acceleration for the C++ Standard Template Library

Christian DeLozier

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 9600 GT, nVidia GeForce GTX 570, OpenCL, Package, Programming techniques, Software Engineering

May 2, 2012 by hgpu

Automatic NUMA Characterization using Cbench

Ryan Braithwaite, Wu-chun Feng, Patrick McCormick

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Tags: Benchmarking, Computer science, CUDA, Heterogeneous systems, nVidia, OpenCL, Package, Task scheduling, Tesla C2050

May 2, 2012 by hgpu

Application of GPUs for the Calculation of Two Point Correlation Functions in Cosmology

Rafael Ponce, Miguel Cardenas-Montes, Juan Jose Rodriguez-Vazquez, Eusebio Sanchez, Ignacio Sevilla

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Tags: Algorithms, Astrophysics, Computational Physics, Cosmology, Cosmology and Extragalactic Astrophysics, CUDA, Instrumentation and Methods for Astrophysics, MPI, nVidia, nVidia GeForce GTX 295, Package, Tesla C1060, Tesla C2050

May 1, 2012 by hgpu

Solving Stochastic Differential Equations Using General Purpose Graphics Processing Unit

Lev Alexandrovich Neiman

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Tags: Algorithms, Computer science, CUDA, Differential equations, nVidia, nVidia GeForce GTX 480, Package, Tesla C1060, Tesla C2075

April 28, 2012 by hgpu

The AGILE library for image reconstruction in biomedical sciences using graphics card hardware acceleration

Manuel Freiberger, Florian Knoll, Kristian Bredies, Hermann Scharfetter, Rudolf Stollberger

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Tags: Algorithms, CUDA, Image processing, Image reconstruction, Magnetic resonance imaging, Medicine, MRI, nVidia, nVidia GeForce GTS 450, nVidia GeForce GTX 480, Package, Tomography

April 28, 2012 by hgpu

Lynx: A Dynamic Instrumentation System for Data-Parallel Applications on GPGPU Architectures

Naila Farooqui, Andrew Kerr, Greg Eisenhauer, Karsten Schwan, Sudhakar Yalamanchili

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Tags: Code generation, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, Optimization, Package, Tesla C2050

April 25, 2012 by hgpu

The Bones Source-to-Source Compiler Manual

Cedric Nugteren

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Tags: Algorithms, Code generation, Computer science, CUDA, MPI, nVidia, OpenCL, Package

April 25, 2012 by hgpu

Parboil: A Revised Benchmark Suite for Scientific and Commercial Throughput Computing

John A. Stratton, Christopher Rodrigues, I-Jui Sung, Nady Obeid, Li-Wen Chang, Nasser Anssari, Geng Daniel Liu, Wen-mei W. Hwu

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Tags: Algorithms, Benchmarking, Computer science, CUDA, Molecular simulation, MPI, nVidia, nVidia GeForce GTX 480, Optimization, Package

April 25, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Packages

A GPU-Accelerated Algorithm for Self-Organizing Maps in a Distributed Environment

GHOSTM: A GPU-Accelerated Homology Search Tool for Metagenomics

A Fair Comparison of Modern CPUs and GPUs Running the Genetic Algorithm under the Knapsack Benchmark

Diderot: A Parallel DSL for Image Analysis and Visualization

GPU Acceleration for the C++ Standard Template Library

Automatic NUMA Characterization using Cbench

Application of GPUs for the Calculation of Two Point Correlation Functions in Cosmology

Solving Stochastic Differential Equations Using General Purpose Graphics Processing Unit

The AGILE library for image reconstruction in biomedical sciences using graphics card hardware acceleration

Lynx: A Dynamic Instrumentation System for Data-Parallel Applications on GPGPU Architectures

The Bones Source-to-Source Compiler Manual

Parboil: A Revised Benchmark Suite for Scientific and Commercial Throughput Computing

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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