high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming

Single molecule detection of tuberculosis nucleic acid using dark field Tethered Particle Motion

Sanneke Brinkers, Heidelinde R.C. Dietrich, Sjoerd Stallinga, Jurriaan J. Mes, Ian T. Young, Bernd Rieger

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Tags: Algorithms, Biology, Biophysics, RNA

June 9, 2011 by hgpu

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

Min-Seok Kwon, Kyunga Kim, Sungyoung Lee, Taesung Park

Source codes

Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, Package

June 9, 2011 by hgpu

Low-Frequency MLFMA on Graphics Processors

M. Cwikla, J. Aronsson, V. Okhmatovski

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Tags: CUDA, Electrodynamics, Fast multipole method, nVidia, nVidia Quadro FX 5800

June 9, 2011 by hgpu

Adaptive Optimization for Petascale Heterogeneous CPU/GPU Computing

Canqun Yang, Feng Wang, Yunfei Du, Juan Chen, Jie Liu, Huizhan Yi, Kai Lu

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Tags: ATI, ATI Radeon HD 4870, ATI Stream, Computer science, Heterogeneous systems, Linear Algebra, Optimization, Presentation

June 9, 2011 by hgpu

SAR focusing of P-band ice sounding data using back-projection

Anders Kusk, Jorgen Dall

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Tags: CUDA, Earth and Space Sciences, nVidia, nVidia GeForce GTX 260

June 9, 2011 by hgpu

Parallelism of Clonal Selection for PSP on CUDA

Hongbing Zhu, Heng Xiao, JinGuang Gu

Tags: Biology, CUDA, Macromolecule, nVidia

June 9, 2011 by hgpu

Parallel multi-level analytical global placement on graphics processing units

Jason Cong, Yi Zou

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Tags: Algorithms, CAD, Computer science, CUDA, nVidia, Performance, Tesla C1060

June 9, 2011 by hgpu

Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs

Lifan Xu, Michela Taufer, Stuart Collins, Dionisios G. Vlachos

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Tags: Chemistry, CUDA, Data parallelism, GPU cluster, Monte Carlo simulation, nVidia, Physics, Tesla S1070

June 9, 2011 by hgpu

Compensating Indirect Scattering for Immersive and Semi-Immersive Projection Displays

Oliver Bimber, Anselm Grundhofer, Thomas Zeidler, Daniel Danch, Pedro Kapakos

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Tags: Algorithms, Computer science, Presentation, Rendering, Sparse matrix, Virtual reality

June 8, 2011 by hgpu

Realtime Ray Tracing on a Hibrid Parallel Architecture

Xin Yang, Duan-qing Xu, Wen-zhi Chen

Tags: Algorithms, Computer science, Rendering

June 8, 2011 by hgpu

Parallel accelerators for GlimmerHMM bioinformatics algorithm

Nafsika Chrysanthou, Grigorios Chrysos, Euripides Sotiriades, Ioannis Papaefstathiou

Tags: Algorithms, Bioinformatics, Biology, FPGA, Genetics

June 8, 2011 by hgpu

Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application

Andrew Janowczyk, Sharat Chandran, Srinivas Aluru

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GTS, Particle filtering, Pseudo-random number generators

June 7, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Single molecule detection of tuberculosis nucleic acid using dark field Tethered Particle Motion

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

Low-Frequency MLFMA on Graphics Processors

Adaptive Optimization for Petascale Heterogeneous CPU/GPU Computing

SAR focusing of P-band ice sounding data using back-projection

Parallelism of Clonal Selection for PSP on CUDA

Parallel multi-level analytical global placement on graphics processing units

Parallelization of tau-leap coarse-grained Monte Carlo simulations on GPUs

Compensating Indirect Scattering for Immersive and Semi-Immersive Projection Displays

Realtime Ray Tracing on a Hibrid Parallel Architecture

Parallel accelerators for GlimmerHMM bioinformatics algorithm

Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Most viewed papers (last 30 days)