high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming

The fast evaluation of hidden Markov models on GPU

Jun Li, Shuangping Chen, Yanhui Li

Tags: Algorithms, Computer science, nVidia, nVidia GeForce 9800 GTX, Statistics

April 12, 2011 by hgpu

Simulating Spiking Neural P systems without delays using GPUs

Francis Cabarle, Henry Adorna, Miguel A. Martinez-del-Amor

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Tags: Computer science, CUDA, Membrane computing, Neural and Evolutionary Computing, nVidia

April 12, 2011 by hgpu

Interactive Simulation and Visualization of Fluids with Surface Raycasting

Renan Teston Inacio, Tiago H. C. Nobrega, Diego D. B. Carvalho, Aldo von Wangenheim

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Tags: 3D Graphics and Realism, Algorithms, Computer science, Fluid simulation, GLSL, nVidia, nVidia GeForce 9800 M GS, OpenGL, Rendering

April 11, 2011 by hgpu

CULA: hybrid GPU accelerated linear algebra routines

John R. Humphrey, Daniel K. Price, Kyle E. Spagnoli, Aaron L. Paolini, Eric J. Kelmelis

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Tags: Computer science, CUDA, CULA, Linear Algebra, nVidia, Package, Tesla C1060

April 11, 2011 by hgpu

Clustering coefficient queries on massive dynamic social networks

Zhiyu Liu, Chen Wang, Qiong Zou, Huayong Wang

Tags: Algorithms, Computer science, Databases, Networks

April 11, 2011 by hgpu

GPU-computing in econophysics and statistical physics

T. Preis

Tags: Computer science, CUDA, Finance, Ising model, nVidia, Physics

April 11, 2011 by hgpu

Exact and complete short read alignment to microbial genomes using GPU programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 280, Package

April 11, 2011 by hgpu

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Yongchao Liu, Bertil Schmidt, Douglas Maskell

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Tags: Bioinformatics, Biology, CUDA, MPI, Next-Generation sequencing, nVidia, OpenMP, Package, Tesla S1070

April 11, 2011 by hgpu

Simulation of bevel gear cutting with GPGPUs-performance and productivity

Sandra Wienke, Dmytro Plotnikov, Dieter an Mey, Christian Bischof, Ario Hardjosuwito, Christof Gorgels, Christian Brecher

Tags: Computational Engineering, Computer science, CUDA, nVidia, OpenCL, OpenMP

April 11, 2011 by hgpu

GPU Accelerated Adams-Bashforth Multirate Discontinuous Galerkin FEM Simulation of High-Frequency Electromagnetic Fields

Nico Godel, Steffen Schomann, Tim Warburton, Markus Clemens

Tags: CUDA, Electrodynamics, Electromagnetics simulation, FEM, Finite element method, nVidia

April 10, 2011 by hgpu

GPU acceleration of the dynamics routine in the HIRLAM weather forecast model

Van Thieu Vu, Gerard Cats, Lex Wolters

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Tags: CUDA, Earth and Space Sciences, nVidia, nVidia GeForce 9800 GX2, Weather Prediction Model

April 10, 2011 by hgpu

Real-time stereo matching: A cross-based local approach

Jiangbo Lu, Ke Zhang, Gauthier Lafruit, Francky Catthoor

Tags: Algorithms, Image processing, Real-time graphics

April 10, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

The fast evaluation of hidden Markov models on GPU

Simulating Spiking Neural P systems without delays using GPUs

Interactive Simulation and Visualization of Fluids with Surface Raycasting

CULA: hybrid GPU accelerated linear algebra routines

Clustering coefficient queries on massive dynamic social networks

GPU-computing in econophysics and statistical physics

Exact and complete short read alignment to microbial genomes using GPU programming

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

Simulation of bevel gear cutting with GPGPUs-performance and productivity

GPU Accelerated Adams-Bashforth Multirate Discontinuous Galerkin FEM Simulation of High-Frequency Electromagnetic Fields

GPU acceleration of the dynamics routine in the HIRLAM weather forecast model

Real-time stereo matching: A cross-based local approach

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

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