high performance computing on graphics processing units: hgpu.org

Programming

hgpu.org » Programming

Data-aware scheduling of legacy kernels on heterogeneous platforms with distributed memory

Michela Becchi, Surendra Byna, Srihari Cadambi, Srimat Chakradhar

Tags: Computer science, CUDA, Distributed data structures, Heterogeneous systems, nVidia, Performance, Programming Languages, Sparse matrix, Tesla C870

May 10, 2011 by hgpu

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

Source codes

Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package

May 10, 2011 by hgpu

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Lydia A. Baumgardner, Avinash K. Shanmugam, Henry Lam, Jimmy K. Eng, Daniel B. Martin

Tags: Biology, Chemistry, CUDA, nVidia, Search, Spectrometry

May 10, 2011 by hgpu

Astrophysical particle simulations with large custom GPU clusters on three continents

R. Spurzem, P. Berczik, I. Berentzen, K. Nitadori, T. Hamada, G. Marcus, A. Kugel, R. Männer, J. Fiestas, R. Banerjee, R. Klessen

View

Download (PDF)

Tags: Astrophysics, CUDA, GPU cluster, MPI, N-body simulation, nVidia, Tesla C1060, Tesla C2050

May 10, 2011 by hgpu

Stock trading strategy creation using GP on GPU

Dave McKenney, Tony White

View

Download (PDF)

Tags: Computer science, CUDA, Genetic programming, nVidia

May 10, 2011 by hgpu

Parallel preconditioned conjugate gradient algorithm on GPU

Rudi Helfenstein, Jonas Koko

Tags: Algorithms, Conjugate gradient solver, Mathematics, Sparse matrix

May 10, 2011 by hgpu

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Hong Li, Linda Petzold

View

Download (PDF)

Tags: Biology, Chemistry, CUDA, nVidia, nVidia GeForce 8800 GTX, Stochastic simulation

May 10, 2011 by hgpu

Twin peaks: a software platform for heterogeneous computing on general-purpose and graphics processors

Jayanth Gummaraju, Laurent Morichetti, Michael Houston, Ben Sander, Benedict R. Gaster, Bixia Zheng

Tags: ATI, Computer science, High-level Languages, OpenCL, Performance, Programming techniques

May 10, 2011 by hgpu

The GPU-based String Matching System in Advanced AC Algorithm

Jiangfeng Peng, Hu Chen, Shaohuai Shi

Tags: Algorithms, Computer science, CUDA, nVidia, String matching

May 9, 2011 by hgpu

GPULib: GPU Computing in High-Level Languages

Peter Messmer, Paul J. Mullowney, Brian E. Granger

Source codes

Tags: Computer science, CUDA, High-level Languages, nVidia, Package

May 9, 2011 by hgpu

GPU-based time parallel cache simulator

Junjie Ma, Han Wan, Xiaopeng Gao, Xiang Long

Tags: Algorithms, Computer science, CUDA, Memory, Memory model, nVidia

May 9, 2011 by hgpu

Ocean wave simulation in real-time using GPU

Chin-Chih Wang, Jia-Xiang Wu, Chao-En Yen, Pangfeng Liu, Chuen-Liang Chen

View

Download (PDF)

Tags: Algorithms, Computer science, CUDA, FFT, Fluid simulation, nVidia, nVidia GeForce 9800 GT, Presentation, Rendering

May 9, 2011 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Programming

Data-aware scheduling of legacy kernels on heterogeneous platforms with distributed memory

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Astrophysical particle simulations with large custom GPU clusters on three continents

Stock trading strategy creation using GP on GPU

Parallel preconditioned conjugate gradient algorithm on GPU

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Twin peaks: a software platform for heterogeneous computing on general-purpose and graphics processors

The GPU-based String Matching System in Advanced AC Algorithm

GPULib: GPU Computing in High-Level Languages

GPU-based time parallel cache simulator

Ocean wave simulation in real-time using GPU

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

Most viewed papers (last 30 days)