high performance computing on graphics processing units: hgpu.org

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Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jorn Kalinowski, Jens Stoye, Alexander Goesmann

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, Package

May 10, 2011 by hgpu

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Lydia A. Baumgardner, Avinash K. Shanmugam, Henry Lam, Jimmy K. Eng, Daniel B. Martin

Tags: Biology, Chemistry, CUDA, nVidia, Search, Spectrometry

May 10, 2011 by hgpu

Astrophysical particle simulations with large custom GPU clusters on three continents

R. Spurzem, P. Berczik, I. Berentzen, K. Nitadori, T. Hamada, G. Marcus, A. Kugel, R. Männer, J. Fiestas, R. Banerjee, R. Klessen

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Tags: Astrophysics, CUDA, GPU cluster, MPI, N-body simulation, nVidia, Tesla C1060, Tesla C2050

May 10, 2011 by hgpu

Stock trading strategy creation using GP on GPU

Dave McKenney, Tony White

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Tags: Computer science, CUDA, Genetic programming, nVidia

May 10, 2011 by hgpu

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

Hong Li, Linda Petzold

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Tags: Biology, Chemistry, CUDA, nVidia, nVidia GeForce 8800 GTX, Stochastic simulation

May 10, 2011 by hgpu

The GPU-based String Matching System in Advanced AC Algorithm

Jiangfeng Peng, Hu Chen, Shaohuai Shi

Tags: Algorithms, Computer science, CUDA, nVidia, String matching

May 9, 2011 by hgpu

GPULib: GPU Computing in High-Level Languages

Peter Messmer, Paul J. Mullowney, Brian E. Granger

Source codes

Tags: Computer science, CUDA, High-level Languages, nVidia, Package

May 9, 2011 by hgpu

GPU-based time parallel cache simulator

Junjie Ma, Han Wan, Xiaopeng Gao, Xiang Long

Tags: Algorithms, Computer science, CUDA, Memory, Memory model, nVidia

May 9, 2011 by hgpu

Ocean wave simulation in real-time using GPU

Chin-Chih Wang, Jia-Xiang Wu, Chao-En Yen, Pangfeng Liu, Chuen-Liang Chen

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Tags: Algorithms, Computer science, CUDA, FFT, Fluid simulation, nVidia, nVidia GeForce 9800 GT, Presentation, Rendering

May 9, 2011 by hgpu

GPU-accelerated computation for robust motion tracking using the CUDA framework

Jing Huang, Sean P. Ponce, Seung In Park, Yong Cao, Francis Quek

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8600 M GT, nVidia GeForce 8800 GTS, Video tracking

May 9, 2011 by hgpu

A GPU implementation of a real-time MIMO detector

Michael Wu, Siddharth Gupta, Yang Sun, Joseph R. Cavallaro

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Tags: Algorithms, CUDA, MIMO, nVidia, nVidia GeForce 9600 GT, Signal processing

May 8, 2011 by hgpu

GPU Acceleration of Multilevel Solvers for Analysis of Microwave Components With Finite Element Method

Adam Dziekonski, Adam Lamecki, Michal Mrozowski

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Tags: Conjugate gradient solver, CUDA, Electrodynamics, Finite element method, Microwave engineering, nVidia, nVidia GeForce GTX 285

May 8, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Programming

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Astrophysical particle simulations with large custom GPU clusters on three continents

Stock trading strategy creation using GP on GPU

Efficient Parallelization of the Stochastic Simulation Algorithm for Chemically Reacting Systems On the Graphics Processing Unit

The GPU-based String Matching System in Advanced AC Algorithm

GPULib: GPU Computing in High-Level Languages

GPU-based time parallel cache simulator

Ocean wave simulation in real-time using GPU

GPU-accelerated computation for robust motion tracking using the CUDA framework

A GPU implementation of a real-time MIMO detector

GPU Acceleration of Multilevel Solvers for Analysis of Microwave Components With Finite Element Method

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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