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Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Konstantin Okonechinkov, German Grekhov, Konstantin Stepanyuk, Mikhail Fursov

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Tags: Algorithms, Bioinformatics, Biology, nVidia, OpenCL, Package, Sequence alignment, Tesla C1060, Tesla C2070

November 22, 2011 by hgpu

Towards Faster Cloth Simulation: Examining the Preconditioned Conjugate Gradient

Konstantinos Sideris

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Tags: 3D Graphics and Realism, Algorithms, Computer science, OpenCL, Pthreads

November 19, 2011 by hgpu

StreamMR: An Optimized MapReduce Framework for AMD GPUs

Marwa Elteir, Heshan Lin, Wu-chun Feng, Tom Scogland

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Tags: Algorithms, ATI, ATI Radeon HD 5870, Computer science, MapReduce, OpenCL

November 19, 2011 by hgpu

Accelerating The Cloud with Heterogeneous Computing

Sahil Suneja, Elliott Baron, Eyal de Lara, Ryan Johnson

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Tags: ATI, ATI Radeon HD 5870, Cloud, Computer science, Hashing, Heterogeneous systems, nVidia, nVidia GeForce GTX 280, OpenCL

November 18, 2011 by hgpu

Auto-tunable GPU BLAS

Jarle Erdal Steinsland

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Tags: Algorithms, ATI, ATI Radeon HD 5750, ATI Radeon HD 5870, BLAS, Computer science, Heterogeneous systems, Linear Algebra, Matrix multiplication, nVidia, OpenCL, Optimization, Tesla C2070, Thesis

November 18, 2011 by hgpu

The Multi2Sim Simulation Framework: A CPU-GPU Model for Heterogeneous Computing

Rafael Ubal, Julio Sahuquillo, Salvador Petit, Pedro Lopez, Zhongliang Chen, David R. Kaeli

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Tags: ATI, ATI Radeon HD 5870, Computer science, Heterogeneous systems, OpenCL, Operating systems, Package

November 18, 2011 by hgpu

Characterization and Transformation of Unstructured Control Flow in GPU Applications

Haicheng Wu, Gregory Diamos, Si Li, Sudhakar Yalamanchili

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, OpenCL, Performance, Programming Languages

November 17, 2011 by hgpu

Adaboost GPU-based Classifier for Direct Volume Rendering

Oscar Amoros, Sergio Escalera, Anna Puig

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Tags: Computer science, CUDA, GLSL, Machine learning, nVidia GeForce 8800 GTX, nVidia GeForce GTX 470, OpenCL, OpenGL, Rendering, Visualization

November 17, 2011 by hgpu

The role of GPU computing in medical image analysis and visualization

S. Moulik, W. Boonn

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Tags: Algorithms, Computer science, CUDA, Image processing, Medicine, nVidia, OpenCL, OpenGL, Visualization

November 17, 2011 by hgpu

Parallel Performance Measurement of Heterogeneous Parallel Systems with GPUs

Allen D. Malony, Scott Biersdorff, Sameer Shende, Heike Jagode, Stanimire Tomov, Guido Juckeland, Robert Dietrich, Duncan Poole, Christopher Lamb

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Tags: Benchmarking, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, OpenCL, Performance, Tesla C870

November 17, 2011 by hgpu

Simulations of Large Particle Systems in Real Time

Witold Alda, Krzysztof Boryczko

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Tags: Algorithms, Computer science, CUDA, Molecular dynamics, nVidia, OpenCL, Particle simulation, Visualization

November 16, 2011 by hgpu

Object Space Based Collision Detection for Cloth Simulation on the GPU

Tzvetomir Vassilev, Vladimir Dochev

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Tags: Algorithms, Collision detection, Computer science, nVidia, nVidia GeForce GTX 260, OpenCL, OpenGL

November 16, 2011 by hgpu

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

SYCL in the edge: performance and energy evaluation for heterogeneous acceleration

OpenMP5-Offload-OpenMC-Intel-PVC

Distributed OpenMP Offloading of OpenMC on Intel GPU MAX Accelerators

See all packages

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high performance computing on graphics processing units: hgpu.org

Programming

Application of GPGPU for Acceleration of Short DNA Sequence Alignment in Unipro UGENE Project

Towards Faster Cloth Simulation: Examining the Preconditioned Conjugate Gradient

StreamMR: An Optimized MapReduce Framework for AMD GPUs

Auto-tunable GPU BLAS

The Multi2Sim Simulation Framework: A CPU-GPU Model for Heterogeneous Computing

Characterization and Transformation of Unstructured Control Flow in GPU Applications

Adaboost GPU-based Classifier for Direct Volume Rendering

The role of GPU computing in medical image analysis and visualization

Parallel Performance Measurement of Heterogeneous Parallel Systems with GPUs

Simulations of Large Particle Systems in Real Time

Object Space Based Collision Detection for Cloth Simulation on the GPU

Recent source codes

QArray

Celerity: High-level C++ for Accelerator Clusters

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

Optical flow algorithms for SYCL

OpenMP5-Offload-OpenMC-Intel-PVC

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