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Solving Wave Equations on Unstructured Geometries

Andreas Klockner, Timothy Warburton, Jan S. Hesthaven

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Tags: Computer science, Mathematical Software, Numerical Analysis, nVidia, nVidia GeForce GTX 295, OpenCL, Package, Python, Wave equation

April 23, 2013 by hgpu

GPU Scripting and Code Generation with PyCUDA

Andreas Klockner, Nicolas Pinto, Bryan Catanzaro, Yunsup Lee, Paul Ivanov, Ahmed Fasih

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Tags: Code generation, Computer science, CUDA, nVidia, OpenCL, Package, PyOpenCL, Python

April 23, 2013 by hgpu

SW# – GPU enabled exact alignments on genome scale

Matija Korpar, Mile Sikic

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 560, nVidia GeForce GTX 570, nVidia GeForce GTX 690, Package, Sequence alignment, Smith-Waterman algorithm

April 23, 2013 by hgpu

Computer Simulation of Saturn’s Ring Structure

Cole Kendrick

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Tags: Astrophysics, ATI, ATI Radeon HD 5850, Gravitation, MPI, N-body simulation, nVidia, nVidia GeForce GTX 580, OpenCL, Package, Tesla S2050

April 21, 2013 by hgpu

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

Cheng Ling, Tsuyoshi Hamada, Jianing Bai, Xianbin Li, Douglas Chesters, Weimin Zheng, Weifeng Shi

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Tags: Algorithms, Bayesian, Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Package

April 18, 2013 by hgpu

A Many-core Machine Model for Designing Algorithms with Minimum Parallelism Overheads

Sardar Anisul Haque, Marc Moreno Maza, Ning Xie

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Tags: Algorithms, CUDA, Package

April 15, 2013 by hgpu

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

Pierre Wahl, Dany-Sebastien Ly-Gagnon, Christof Debaes, Jurgen Van Erps, Nathalie Vermeulen, David A. B. Miller, Hugo Thienpont

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Tags: Algorithms, CUDA, Electrodynamics, FDTD, Finite-difference time-domain, nVidia, Package, Tesla C2075

April 13, 2013 by hgpu

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

Yongchao Liu, Adrianto Wirawan, Bertil Schmidt

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 680, nVidia GeForce GTX 690, Package, PTX, Sequence alignment, Smith-Waterman algorithm

April 10, 2013 by hgpu

OpenCL Fast Fourier Transform

Ruobing Li

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Tags: Computer science, FFT, nVidia, OpenCL, Package, Tesla M2070

April 9, 2013 by hgpu

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

R. Capuzzo-Dolcettaa, M. Spera

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Tags: Astrophysics, ATI, ATI Radeon HD 6970, ATI Radeon HD 7870, ATI Radeon HD 7970, Gravitation, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Tesla C1060, Tesla C2050, Tesla K20

April 9, 2013 by hgpu

Atomic-free Irregular Computations on GPUs

Rupesh Nasre, Martin Burtscher, Keshav Pingali

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Package, Performance, Tesla K20

April 7, 2013 by hgpu

Adapting Particle Filter Algorithms to Many-Core Architectures

Mehdi Chitchian, Alexander S. van Amesfoort, Andrea Simonetto, Tamas Keviczky, Henk J. Sips

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Tags: Algorithms, ATI, ATI Radeon HD 6970, ATI Radeon HD 7970, Bayesian, Computer science, Computer vision, CUDA, Filtering, Monte Carlo simulation, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 680, OpenCL, Package, Particle filtering

April 4, 2013 by hgpu

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

Can Large Language Models Predict Parallel Code Performance?

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high performance computing on graphics processing units: hgpu.org

Solving Wave Equations on Unstructured Geometries

GPU Scripting and Code Generation with PyCUDA

SW# – GPU enabled exact alignments on genome scale

Computer Simulation of Saturn’s Ring Structure

MrBayes tgMC3: A Tight GPU Implementation of MrBayes

A Many-core Machine Model for Designing Algorithms with Minimum Parallelism Overheads

B-Calm: an Open-Source Multi-Gpu-Based 3D-FDTD with Multi-Pole Dispersion for Plasmonics

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

OpenCL Fast Fourier Transform

A Performance Comparison of Different Graphics Processing Units Running Direct N-Body Simulations

Atomic-free Irregular Computations on GPUs

Adapting Particle Filter Algorithms to Many-Core Architectures

Recent source codes

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

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Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

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