high performance computing on graphics processing units: hgpu.org

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Large-scale Nanostructure Simulations from X-ray Scattering Data On Graphics Processor Clusters

Abhinav Sarje, Jack Pien, Xiaoye S. Li, Elaine Chan, Slim Chourou, Alexander Hexemer, Arthur Scholz and Edward Kramer

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Tags: Algorithms, CUDA, GPU cluster, Monte Carlo simulation, MPI, nVidia, Optimization, Physics, Tesla C2050, Tesla M2090

May 30, 2012 by hgpu

Time-dependent density-functional theory in massively parallel computer architectures: the OCTOPUS project

Xavier Andrade, Joseba Alberdi-Rodriguez, David A. Strubbe, Micael J. T. Oliveira, Fernando Nogueira, Alberto Castro, Javier Muguerza, Agustin Arruabarrena, Steven G. Louie, Alan Aspuru-Guzik, Angel Rubio, Miguel A. L. Marques

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Tags: ATI, ATI Radeon HD 5870, Data parallelism, Density-functional theory, nVidia, nVidia GeForce GTX 480, OpenCL, Optimization, Package, Physics, Tesla M2090

May 29, 2012 by hgpu

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

Andreas W. Gotz, Mark J. Williamson, Dong Xu, Duncan Poole, Scott Le Grand, Ross C. Walker

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Tags: Algorithms, Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce GTX 580, Tesla C1060, Tesla C2070, Tesla M2090

May 26, 2012 by hgpu

A Monte Carlo Neutron Transport Code for Eigenvalue Calculations on a Dual-GPU System and CUDA Environment

Tianyu Liu, Aiping Ding, Wei Ji, X. George Xu, Christopher D. Carothers, Forrest B. Brown

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Tags: Algorithms, CUDA, Monte Carlo simulation, Nuclear physics, nVidia, Physics, Tesla M2090

May 15, 2012 by hgpu

Radiation Modeling Using the Uintah Heterogeneous CPU/GPU Runtime System

Alan Humphrey, Qingyu Meng, Martin Berzins, Todd Harman

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Tags: CUDA, Fluid dynamics, GPU cluster, Heterogeneous systems, MPI, nVidia, Partial differential equations, Pthreads, Task scheduling, Tesla M2090

May 11, 2012 by hgpu

BarraCUDA – a fast short read sequence aligner using graphics processing units

Petr Klus, Simon Lam, Dag Lyberg, Ming Sin Cheung, Graham Pullan, Ian McFarlane, Giles S. H. Yeo, Brian Y. H. Lam

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla M2050, Tesla M2090

January 13, 2012 by hgpu

Implementing Parallel SMO to Train SVM on CUDA-Enabled Systems

Zhong Chen, Jack Chua

Tags: Algorithms, Computer science, CUDA, nVidia, Optimization, Tesla M2090

January 4, 2012 by hgpu

A GPU-Enabled, High-Resolution Cosmological Microlensing Parameter Survey

Nicholas F. Bate, C. J. Fluke

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Tags: Astrophysics, Cosmology and Extragalactic Astrophysics, CUDA, Gravitation, Instrumentation and Methods for Astrophysics, nVidia, Tesla C2070, Tesla M2090

November 24, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Large-scale Nanostructure Simulations from X-ray Scattering Data On Graphics Processor Clusters

Time-dependent density-functional theory in massively parallel computer architectures: the OCTOPUS project

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

A Monte Carlo Neutron Transport Code for Eigenvalue Calculations on a Dual-GPU System and CUDA Environment

Radiation Modeling Using the Uintah Heterogeneous CPU/GPU Runtime System

BarraCUDA – a fast short read sequence aligner using graphics processing units

Implementing Parallel SMO to Train SVM on CUDA-Enabled Systems

A GPU-Enabled, High-Resolution Cosmological Microlensing Parameter Survey

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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