high performance computing on graphics processing units: hgpu.org

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Acceleration of bilateral filtering algorithm for manycore and multicore architectures

Dinesh Agarwal, Sami Wilf, Abinashi Dhungel, Sushil K. Prasad

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Tags: Algorithms, Computer science, CUDA, Filtering, nVidia, nVidia GeForce GTX 280, Optimization, Package

July 2, 2012 by hgpu

Accelerating large-scale protein structure alignments with graphics processing units

Bin Pang, Nan Zhao, Michela Becchi, Dmitry Korkin, Chi-Ren Shyu

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Tags: Bioinformatics, Biology, CUDA, Java, nVidia, Package, Tesla C2050

June 30, 2012 by hgpu

An Optimized Large-Scale Hybrid DGEMM Design for CPUs and ATI GPUs

Jiajia Li, Xingjian Li, Guangming Tan, Mingyu Chen, Ninghui Sun

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Tags: Algorithms, ATI, ATI CAL, ATI Radeon HD 5970, ATI Stream, Computer science, Heterogeneous systems, Matrix multiplication, Optimization, Package

June 29, 2012 by hgpu

Multi-GPU Island-Based Genetic Algorithm for Solving the Knapsack Problem

Jiri Jaros

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Tags: Algorithms, Computer science, CUDA, Genetic programming, GPU cluster, MPI, nVidia, nVidia GeForce GTX 580, Package

June 26, 2012 by hgpu

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Tesla C2050

June 21, 2012 by hgpu

FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method

Rio Yokota, L. A. Barba

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Tags: Computational Physics, Computer science, CUDA, Fast multipole method, FFT, Fluid dynamics, N-body simulation, Numerical Analysis, Numerical simulation, nVidia, Package, Spectral methods, Tesla C2070, Tesla M2050

June 21, 2012 by hgpu

High-precision molecular dynamics simulation of UO2-PuO2: Anion self-diffusion in UO2

S.I. Potashnikov, A.S. Boyarchenkov, K.A. Nekrasov, A.Ya. Kupryazhkin

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Tags: Condensed matter, CUDA, DirectCompute, HLSL, Materials Science, Molecular dynamics, nVidia, Package

June 21, 2012 by hgpu

Towards a GPU-based Implementation of Interaction Nets

Eugen Jiresch

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Tags: Computer science, CUDA, Graph theory, nVidia, nVidia GeForce GTX 460, Package

June 20, 2012 by hgpu

GPU Computing: Image Convolution

Jan Novak, Anton Kaplanyan, Gabor Liktor, Carsten Dachsbacher

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Tags: Education, Image processing, OpenCL, Package

June 20, 2012 by hgpu

Gdev: First-Class GPU Resource Management in the Operating System

Shinpei Kato, Michael McThrow, Carlos Maltzahn, Scott Brandt

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, Operating systems, Package

June 18, 2012 by hgpu

GPUmotif: An Ultra-Fast and Energy-Efficient Motif Analysis Program Using Graphics Processing Units

Pooya Zandevakili, Ming Hu, Zhaohui Qin

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Tags: Algorithms, Biochemistry, Biology, Chemistry, Computational biology, Computer science, CUDA, Genetics, nVidia, nVidia GeForce GTX 260, nVidia GeForce GTX 480, Package

June 17, 2012 by hgpu

ScatterAlloc: Massively Parallel Dynamic Memory Allocation for the GPU

Steinberger Markus, Kenzel Michael, Kainz Bernhard, Schmalstieg Dieter

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Tags: Computer science, CUDA, Hashing, Memory, nVidia, nVidia Quadro FX 6000, Package

June 16, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Acceleration of bilateral filtering algorithm for manycore and multicore architectures

Accelerating large-scale protein structure alignments with graphics processing units

An Optimized Large-Scale Hybrid DGEMM Design for CPUs and ATI GPUs

Multi-GPU Island-Based Genetic Algorithm for Solving the Knapsack Problem

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method

High-precision molecular dynamics simulation of UO2-PuO2: Anion self-diffusion in UO2

Towards a GPU-based Implementation of Interaction Nets

GPU Computing: Image Convolution

Gdev: First-Class GPU Resource Management in the Operating System

GPUmotif: An Ultra-Fast and Energy-Efficient Motif Analysis Program Using Graphics Processing Units

ScatterAlloc: Massively Parallel Dynamic Memory Allocation for the GPU

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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