high performance computing on graphics processing units: hgpu.org

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Accelerated Large-Scale Multiple Sequence Alignment

Scott Lloyd, Quinn O. Snell

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Tags: Algorithms, Bioinformatics, Biology, FPGA, Package, Sequence alignment

January 19, 2012 by hgpu

A Template Metaprogramming Approach to Support Parallel Programs for Multicores

Xin Liu, Daqiang Zhang, Jingyu Zhou, Minyi Guo, Yao Shen

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Tags: Computer science, nVidia, nVidia GeForce 9400 M, OpenCL, Optimization, Package, Programming techniques

January 17, 2012 by hgpu

Programming on Parallel Machines: GPU, Multicore, Clusters and More

Norm Matloff

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Tags: Book, Computer science, CUDA, MPI, nVidia, Package, Programming techniques, Review, Tutorial

January 16, 2012 by hgpu

A Modular System Architecture for Online Parallel Vision Pipelines

Jeremie Papon, Alexey Abramov, Eren Aksoy, Florentin Worgotter

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Tags: Algorithms, Computer science, Computer vision, CUDA, nVidia, nVidia GeForce GTX 295, Optical flow, Package

January 16, 2012 by hgpu

Theano: Deep Learning on GPUs with Python

James Bergstra, Frederic Bastien, Olivier Breuleux, Pascal Lamblin, Razvan Pascanu, Olivier Delalleau, Guillaume Desjardins, David Warde-Farley, Ian Goodfellow, Arnaud Bergeron, Yoshua Bengio

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Tags: Algorithms, Compilers, Computer science, CUDA, nVidia, nVidia GeForce GTX 285, Package, Python

January 16, 2012 by hgpu

BarraCUDA – a fast short read sequence aligner using graphics processing units

Petr Klus, Simon Lam, Dag Lyberg, Ming Sin Cheung, Graham Pullan, Ian McFarlane, Giles S. H. Yeo, Brian Y. H. Lam

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla M2050, Tesla M2090

January 13, 2012 by hgpu

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Muller-Wittig

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Tags: Algorithms, Biology, Computational biology, CUDA, Image processing, Machine learning, nVidia, Package, Tesla C2050

January 13, 2012 by hgpu

MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Peng Jia, Liming Xuan, Lei Liu, Chaochun Wei

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Tags: Biology, Computational biology, CUDA, Genetics, nVidia, Package, Tesla C1060

January 11, 2012 by hgpu

Report on the Feasibility of Implementing PIC Codes on a GPU

Joshua Payne

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Tags: CUDA, nVidia, nVidia GeForce GTX 470, Package, Physics, Plasma physics

January 7, 2012 by hgpu

CodePy

Martin Kempf

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Tags: Code generation, Computer science, CUDA, nVidia, Package, Python

January 6, 2012 by hgpu

A GPU Implementation of Inclusion-based Points-to Analysis

Mario Mendez-Lojo, Martin Burtscher, Keshav Pingali

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, Package, Performance, Programming techniques, Tesla C2070

January 5, 2012 by hgpu

Implementation of Keccak hash function in Tree hashing mode on Nvidia GPU

Guillaume Sevestre

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Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce GTS 250, nVidia Quadro FX 370 M, Optimization, Package, Security, Stream Ciphers

January 5, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Accelerated Large-Scale Multiple Sequence Alignment

A Template Metaprogramming Approach to Support Parallel Programs for Multicores

Programming on Parallel Machines: GPU, Multicore, Clusters and More

A Modular System Architecture for Online Parallel Vision Pipelines

Theano: Deep Learning on GPUs with Python

BarraCUDA – a fast short read sequence aligner using graphics processing units

Parallel mutual information estimation for inferring gene regulatory networks on GPUs

MetaBinG: Using GPUs to Accelerate Metagenomic Sequence Classification

Report on the Feasibility of Implementing PIC Codes on a GPU

CodePy

A GPU Implementation of Inclusion-based Points-to Analysis

Implementation of Keccak hash function in Tree hashing mode on Nvidia GPU

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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