high performance computing on graphics processing units: hgpu.org

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Brownian dynamics simulations on CPU and GPU with BD_BOX

Maciej Dlugosz, Pawel Zielinski, Joanna Trylska

Source codes

Tags: Chemistry, CUDA, Molecular dynamics, MPI, nVidia, OpenMP, Package

June 16, 2011 by hgpu

A sparse octree gravitational N-body code that runs entirely on the GPU processor

Jeroen Bedorf, Evghenii Gaburov, Simon Portegies Zwart

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Tags: Astrophysics, CUDA, Gravitation, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce GTX 285, nVidia GeForce GTX 480, Package, Tesla C1060, Tesla C2050

June 14, 2011 by hgpu

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

Min-Seok Kwon, Kyunga Kim, Sungyoung Lee, Taesung Park

Source codes

Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, Package

June 9, 2011 by hgpu

GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores

Satish Chikkagoudar, Kai Wang, Mingyao Li

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Tags: Biology, CUDA, Genetics, nVidia, nVidia Quadro FX 1800, Package, Tesla C1060

June 7, 2011 by hgpu

Accelerating Unstructured Mesh Computational Fluid Dynamics on the NVidia Tesla GPU Architecture

Graham Markall

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Tags: Conjugate gradient solver, CUDA, Fluid dynamics, nVidia, nVidia GeForce GTX 280, Package, Thesis

June 5, 2011 by hgpu

Performance Analysis of the OP2 Framework on Many-core Architectures

M.B. Giles, G.R. Mudalige, Z. Sharif, G. Markall and P.H.J Kelly

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Tags: CUDA, Fluid dynamics, GPU cluster, nVidia, nVidia GeForce GTX 260, OpenMP, Package, Performance, Tesla C2050

June 5, 2011 by hgpu

A framework for parallel unstructured grid applications on GPUs

Mike Giles

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Tags: Code generation, Computer science, CUDA, GPU cluster, MPI, nVidia, OpenCL, OpenMP, Package, PDEs, Presentation

June 5, 2011 by hgpu

GPUMLib: A new Library to combine Machine Learning algorithms with Graphics Processing Units

N. Lopes, B. Ribeiro, R. Quintas

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Tags: Computer science, CUDA, Machine learning, nVidia, Package

June 1, 2011 by hgpu

GPU-Based Cell Projection for Interactive Volume Rendering

Ricardo Marroquim, Andre Maximo, Ricardo Farias, Claudio Esperanca

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Tags: Algorithms, Computer science, GLSL, nVidia, nVidia GeForce 6800, OpenGL, Package, Rendering

May 23, 2011 by hgpu

Improving the Speed of Virtual Rear Projection: A GPU-Centric Architecture

Matthew Flagg, Jay Summet, James M. Rehg

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Tags: Computer vision, DirectX, Image processing, nVidia, nVidia GeForce FX 6800 GT, Package

May 22, 2011 by hgpu

Softassign and EM-ICP on GPU

Toru Tamaki, Miho Abe, Bisser Raytchev, Kazufumi Kaneda

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Tags: 3D Graphics and Realism, Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 8800 GT, Package

May 14, 2011 by hgpu

Fast network centrality analysis using GPUs

Zhiao Shi, Bing Zhang

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Tags: All-Pairs Distance, Bioinformatics, Biology, CUDA, nVidia, Package, Tesla C2050

May 13, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Brownian dynamics simulations on CPU and GPU with BD_BOX

A sparse octree gravitational N-body code that runs entirely on the GPU processor

cuGWAM: Genome-wide association multifactor dimensionality reduction using CUDA-enabled high-performance graphics processing unit

GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores

Accelerating Unstructured Mesh Computational Fluid Dynamics on the NVidia Tesla GPU Architecture

Performance Analysis of the OP2 Framework on Many-core Architectures

A framework for parallel unstructured grid applications on GPUs

GPUMLib: A new Library to combine Machine Learning algorithms with Graphics Processing Units

GPU-Based Cell Projection for Interactive Volume Rendering

Improving the Speed of Virtual Rear Projection: A GPU-Centric Architecture

Softassign and EM-ICP on GPU

Fast network centrality analysis using GPUs

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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