high performance computing on graphics processing units: hgpu.org

hgpu.org » Package

ABC-SysBio–approximate Bayesian computation in Python with GPU support

Juliane Liepe, Chris Barnes, Erika Cule, Kamil Erguler, Paul Kirk, Tina Toni, Michael P. H. Stumpf

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Python

November 9, 2010 by hgpu

On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods

Anthony Lee, Christopher Yau, Michael B. Giles, Arnaud Doucet, Christopher C. Holmes

View

Download (PDF)

Source codes

Tags: CUDA, Mathematics, Monte Carlo simulation, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 280, Package, Statistics

November 8, 2010 by hgpu

GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model

Tobias Preis, Peter Virnau, Wolfgang Paul, Johannes J. Schneider

View

Download (PDF)

Source codes

Tags: CUDA, Finite size scaling, Ising model, Monte Carlo simulation, nVidia, nVidia GeForce GTX 280, Package, Phase transition, Physics

November 8, 2010 by hgpu

Solving lattice QCD systems of equations using mixed precision solvers on GPUs

M. A. Clark, R. Babich, K. Barros, R. C. Brower, C. Rebbi

View

Download (PDF)

Source codes

Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 280, Package, Physics, QCD

November 8, 2010 by hgpu

Accelerating glassy dynamics using graphics processing units

Peter H. Colberg, Felix Hofling

View

Download (PDF)

Source codes

Tags: Computational Physics, CUDA, nVidia, nVidia GeForce GTX 280, Package, Physics, Soft Condensed Matter

November 8, 2010 by hgpu

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS

Casey S. Greene, Nicholas A. Sinnott-Armstrong, Daniel S. Himmelstein, Paul J. Park, Jason H. Moore, Brent T. Harris

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 295, Package

November 7, 2010 by hgpu

Parallel hyperbolic PDE simulation on clusters: Cell versus GPU

Scott Rostrup, Hans De Sterck

View

Download (PDF)

Source codes

Tags: Cell processor, CUDA, Hyperbolic PDEs, Hyperbolic system, Mathematics, nVidia, Package, Tesla C2050, Tesla T10

November 7, 2010 by hgpu

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, L. A. Barba, Tsuyoshi Hamada

View

Download (PDF)

Source codes

Tags: Chemistry, CUDA, GPU cluster, Molecular modeling, nVidia, nVidia GeForce GTX 295, Package

November 7, 2010 by hgpu

MDLab: A molecular dynamics simulation prototyping environment

Trevor Cickovski, Santanu Chatterjee, Jacob Wenger, Christopher R. Sweet, Jesus A. Izaguirre

View

Download (PDF)

Source codes

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, Package, Python

November 6, 2010 by hgpu

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas Maskell

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Smith-Waterman algorithm

November 6, 2010 by hgpu

Automatic fitting of spiking neuron models to electrophysiological recordings

Cyrille Rossant, Dan F. Goodman, Jonathan Platkiewicz, Romain Brette

View

Download (PDF)

Source codes

Tags: Adaptive threshold, Biology, CUDA, Distributed computing, Neuroscience, nVidia, nVidia GeForce GTX 295, Optimization, Package

November 6, 2010 by hgpu

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Samer Al-Kiswany, Abdullah Gharaibeh, Elizeu Santos-Neto, George Yuan, Matei Ripeanu

View

Download (PDF)

Source codes

Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 9800 GTX, Package, Storage system

November 6, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

ABC-SysBio–approximate Bayesian computation in Python with GPU support

On the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods

GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model

Solving lattice QCD systems of equations using mixed precision solvers on GPUs

Accelerating glassy dynamics using graphics processing units

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS

Parallel hyperbolic PDE simulation on clusters: Cell versus GPU

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

MDLab: A molecular dynamics simulation prototyping environment

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Automatic fitting of spiking neuron models to electrophysiological recordings

StoreGPU: exploiting graphics processing units to accelerate distributed storage systems

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Most viewed papers (last 30 days)