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Sequence Homology Search using Fine-Grained Cycle Sharing of Idle GPUs

Fumihiko Ino, Yuma Munekawa, Kenichi Hagihara

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Tags: Algorithms, Computer science, CUDA, Distributed computing, nVidia, nVidia GeForce 8800 GTX, nVidia GeForce GTX 285, Search, Smith-Waterman algorithm

December 4, 2011 by hgpu

GPU-based Multi-start Local Search Algorithms

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Algorithms, Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce GTX 280, Optimization, Search

November 22, 2011 by hgpu

Fast QAP Solver with ACO and Taboo Search on GPU using Move-Cost Adjusted Thread Assignment

Shigeyoshi Tsutsui, Noriyuki Fujimoto

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Tags: Algorithms, Computer science, CUDA, Evolutionary Computations, Neural and Evolutionary Computing, nVidia, nVidia GeForce GTX 480, Search

November 5, 2011 by hgpu

Data-Parallel Construction of delta_N-Nets with Maximum Dispersion

Peter Zinterhof

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Tags: Algorithms, Computational Complexity, Computer science, Nearest neighbour, nVidia, nVidia GeForce GTX 470, nVidia GeForce GTX 480, OpenCL, OpenMPI, Search, Tesla C2050

October 10, 2011 by hgpu

ACO with tabu search on a GPU for solving QAPs using move-cost adjusted thread assignment

Shigeyoshi Tsutsui, Noriyuki Fujimoto

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 480, Optimization, Search

September 19, 2011 by hgpu

GPU-Based approaches for multiobjective local search algorithms. A case study: the flowshop scheduling problem

The Van Luong, Nouredine Melab, El-Ghazali Talbi

Tags: Algorithms, Computer science, Search

September 7, 2011 by hgpu

Large neighborhood local search optimization on graphics processing units

The Van Luong, Nouredine Melab, El-Ghazali Talbi

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Tags: Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce GTX 280, Search

June 5, 2011 by hgpu

A GPU-based iterated tabu search for solving the quadratic 3-dimensional assignment problem

The Van Luong, Lakhdar Loukil, Nouredine Melab, El-Ghazali Talbi

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Tags: Computer science, CUDA, Metaheuristics, nVidia, nVidia GeForce 8600 M GT, Search

May 11, 2011 by hgpu

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Lydia A. Baumgardner, Avinash K. Shanmugam, Henry Lam, Jimmy K. Eng, Daniel B. Martin

Tags: Biology, Chemistry, CUDA, nVidia, Search, Spectrometry

May 10, 2011 by hgpu

Speeding-up Pearson Correlation Coefficient calculation on graphical processing units

K.Berker Logoglu, Tugrul K. Ates

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Tags: ATI, ATI Radeon HD 5870, CUDA, nVidia, nVidia GeForce 8500 GT, nVidia GeForce 8600 M GT, nVidia GeForce GTX 285, OpenCL, Search, Signal processing

April 2, 2011 by hgpu

Efficient Discrete Range Searching primitives on the GPU with applications

J. Soman, M.K. Kumar, K. Kothapalli, P.J. Narayanan

Tags: Algorithms, Computer science, Search

March 28, 2011 by hgpu

GPU Octrees and Optimized Search

Daniel Madeira, Anselmo Montenegro, Esteban Clua, Thomas Lewiner

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce 9600 M GT, Search

March 12, 2011 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Sequence Homology Search using Fine-Grained Cycle Sharing of Idle GPUs

GPU-based Multi-start Local Search Algorithms

Fast QAP Solver with ACO and Taboo Search on GPU using Move-Cost Adjusted Thread Assignment

Data-Parallel Construction of delta_N-Nets with Maximum Dispersion

ACO with tabu search on a GPU for solving QAPs using move-cost adjusted thread assignment

GPU-Based approaches for multiobjective local search algorithms. A case study: the flowshop scheduling problem

Large neighborhood local search optimization on graphics processing units

A GPU-based iterated tabu search for solving the quadratic 3-dimensional assignment problem

Fast Parallel Tandem Mass Spectral Library Searching Using GPU Hardware Acceleration

Speeding-up Pearson Correlation Coefficient calculation on graphical processing units

Efficient Discrete Range Searching primitives on the GPU with applications

GPU Octrees and Optimized Search

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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