high performance computing on graphics processing units: hgpu.org

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CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

Yongchao Liu, Bertil Schmidt, Douglas L. Maskell

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Tesla C2050

June 21, 2012 by hgpu

GPU Accelerated Greedy Algorithms for Compressed Sensing

Jeffrey D. Blanchard, Jared Tanner

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Tags: Algorithms, Computer science, CUDA, nVidia, Optimization, Sensing, Tesla C2050

June 20, 2012 by hgpu

Optimizing dataflow applications on heterogeneous environments

George Teodoro, Timothy D. R. Hartley, Umit V. Catalyurek, Renato Ferreira

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Tags: Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 260, Tesla C2050

June 19, 2012 by hgpu

OpenACC – First Experiences with Real-World Applications

Sandra Wienke, Paul Springer, Christian Terboven, Dieter an Mey

Tags: Computer science, Fortran, Heterogeneous systems, nVidia, OpenACC, OpenCL, Tesla C2050

June 18, 2012 by hgpu

GiST Scan Acceleration using Coprocessors

Felix Beier, Torsten Kilias, Kai-Uwe Sattler

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Tags: Collision detection, Computer science, CUDA, nVidia, Raytracing, Tesla C2050

June 16, 2012 by hgpu

Parallel random variates generator for GPUs based on normal numbers

Gleb Beliakov, Michael Johnstone, Doug Creighton, Tim Wilkin

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Tags: Algorithms, Computer science, CUDA, Mathematical Software, Numerical Analysis, nVidia, Probability, Pseudo-random number generators, Tesla C2050

June 8, 2012 by hgpu

Hierarchical Partitioning Algorithm for Scientific Computing on Highly Heterogeneous CPU + GPU Clusters

David Clarke, Aleksandar Ilic, Alexey Lastovetsky, Leonel Sousa

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Tags: Computer science, CPU cluster, GPU cluster, Heterogeneous systems, Matrix multiplication, nVidia, Tesla C2050, Tesla T10

June 5, 2012 by hgpu

High Accuracy Gravitational Waveforms from Black Hole Binary Inspirals Using OpenCL

Justin McKennon, Gary Forrester, Gaurav Khanna

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Tags: ATI, ATI Radeon HD 7970, Differential equations, General Relativity and Quantum Cosmology, Gravitation, Gravitational waves, nVidia, OpenCL, Partial differential equations, PDEs, Physics, Tesla C2050

June 4, 2012 by hgpu

Parallel Triangular Solvers on GPU

Hui Liu, Song Yu, Zhangxin Chen

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Tags: Computer science, CUDA, Factorization, Linear Algebra, nVidia, Tesla C2050, Tesla C2070

June 3, 2012 by hgpu

Reservoir Simulation on NVIDIA Tesla GPUs

Zhangxin Chen, Hui Liu, Song Yu, Ben Hsieh, Lei Shao

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Tags: Computer science, nVidia, Tesla C2050, Tesla C2070

June 3, 2012 by hgpu

Towards Distributed Heterogenous High-Performance Computing with ViennaCL

Josef Weinbub, Karl Rupp, Siegfried Selberherr

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Tags: Benchmarking, Computer science, Distributed computing, MPI, nVidia, nVidia GeForce GTX 470, nVidia GeForce GTX 580, OpenCL, Package, Tesla C2050

June 1, 2012 by hgpu

MPI-ACC: An Integrated and Extensible Approach to Data Movement in Accelerator-Based Systems

Ashwin M. Aji, James Dinan, Darius Buntinas, Pavan Balaji, Wu-chun Feng, Keith R. Bisset, Rajeev Thakur

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Tags: Computer science, CUDA, GPU cluster, MPI, nVidia, Tesla C2050

June 1, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform

GPU Accelerated Greedy Algorithms for Compressed Sensing

Optimizing dataflow applications on heterogeneous environments

OpenACC – First Experiences with Real-World Applications

GiST Scan Acceleration using Coprocessors

Parallel random variates generator for GPUs based on normal numbers

Hierarchical Partitioning Algorithm for Scientific Computing on Highly Heterogeneous CPU + GPU Clusters

High Accuracy Gravitational Waveforms from Black Hole Binary Inspirals Using OpenCL

Parallel Triangular Solvers on GPU

Reservoir Simulation on NVIDIA Tesla GPUs

Towards Distributed Heterogenous High-Performance Computing with ViennaCL

MPI-ACC: An Integrated and Extensible Approach to Data Movement in Accelerator-Based Systems

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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