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Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline

Andrew W. Dowsey, Michael J. Dunn, Guang-Zhong Z. Yang

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Tags: Bioinformatics, Biology, Cg, Image alignment, nVidia, nVidia GeForce 6800 Ultra, Package

January 11, 2011 by hgpu

Exploring new architectures in accelerating CFD for Air Force applications

Jack Dongarra, Shirley Moore, Gregory Peterson, Stanimire Tomov

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Tags: Algorithms, Fluid dynamics, FPGA, nVidia, nVidia Quadro FX 5600, Tesla T10P

January 11, 2011 by hgpu

SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach

N. Sanna, I. Baccarelli, G. Morelli

Tags: Biology, Chemistry, CUDA, Molecular modeling, nVidia

January 11, 2011 by hgpu

iNFAnt: NFA pattern matching on GPGPU devices

Niccolo' Cascarano, Pierluigi Rolando, Fulvio Risso, Riccardo Sisto

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Tags: Computer science, CUDA, Networks, nVidia, nVidia GeForce GTX 260, String matching

January 11, 2011 by hgpu

Accelerating linpack with CUDA on heterogenous clusters

Massimiliano Fatica

Tags: Computer science, CUDA, GPU cluster, Linear Algebra, nVidia

January 11, 2011 by hgpu

CUDA-based real time surgery simulation

Youquan Liu, Suvranu De

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Tags: CUDA, Medicine, nVidia, nVidia GeForce 8800 GTX, Surgical simulation

January 11, 2011 by hgpu

Fast binding site mapping using GPUs and CUDA

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biology, CUDA, Molecular dynamics, nVidia, Tesla C1060

January 11, 2011 by hgpu

Quality-score guided error correction for short-read sequencing data using CUDA

Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang Muller-Wittig

Tags: Bioinformatics, Biology, CUDA, Error recovery, Genetics, nVidia

January 11, 2011 by hgpu

High-speed volume ray casting with CUDA

L. Marsalek, A. Hauber, P. Slusallek

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Tags: Computer science, CUDA, nVidia, Poster, Real-time graphics

January 10, 2011 by hgpu

Parallel drainage network computation on CUDA

L. Ortega, A. Rueda

Tags: CUDA, Earth and Space Sciences, Geoscience, nVidia

January 10, 2011 by hgpu

Canny edge detection on NVIDIA CUDA

Yuancheng Luo, Ramani Duraiswami

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Tags: Computer vision, CUDA, Image processing, nVidia, nVidia GeForce 8800 GTX, Package

January 10, 2011 by hgpu

Molecular Dynamics Simulations on Commodity GPUs with CUDA

Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Muller-Wittig

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Tags: Chemistry, CUDA, Molecular dynamics, nVidia, nVidia GeForce 8800 GTX

January 10, 2011 by hgpu

Allo: Accelerator Design Language

Dato: A Task-Based Programming Model for Dataflow Accelerators

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Accelerating a Linear Programming Algorithm on AMD GPUs

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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high performance computing on graphics processing units: hgpu.org

Automated image alignment for 2D gel electrophoresis in a high-throughput proteomics pipeline

Exploring new architectures in accelerating CFD for Air Force applications

SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach

iNFAnt: NFA pattern matching on GPGPU devices

Accelerating linpack with CUDA on heterogenous clusters

CUDA-based real time surgery simulation

Fast binding site mapping using GPUs and CUDA

Quality-score guided error correction for short-read sequencing data using CUDA

High-speed volume ray casting with CUDA

Parallel drainage network computation on CUDA

Canny edge detection on NVIDIA CUDA

Molecular Dynamics Simulations on Commodity GPUs with CUDA

Recent source codes

Allo: Accelerator Design Language

Towards Robust Agentic CUDA Kernel Benchmarking, Verification, and Optimization

HPC Benchmark Survey

HDM: Home made Diffusion Models

General Matrix Multiplication (GEMM)

CrossTL: Universal Programming Language & Translator

TBD-GPU

DG-SWEM - The Discontinuous Galerkin Shallow Water Equation Model

torchPDLP: Primal-Dual Linear Programming in PyTorch. In collaboration with AMD and IPAM

Benchmarks for Dissecting CPU-GPU Unified Physical Memory on AMD MI300A APUs

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