high performance computing on graphics processing units: hgpu.org

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A GPU-based hyperbolic SVD algorithm

Vedran Novakovic, Sanja Singer

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Tags: Computer science, CUDA, Hyperbolic system, Mathematics, MPI, Numerical Analysis, nVidia, nVidia GeForce GTX 275, nVidia GeForce GTX 280, Tesla C1060

November 10, 2010 by hgpu

A GPU implementation of a track-repeating algorithm for proton radiotherapy dose calculations

Pablo P Yepes, Dragan Mirkovic, Phillip J Taddei

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Tags: CUDA, Medical Physics, Medicine, Monte Carlo simulation, Nuclear Experiment, nVidia, nVidia GeForce GTX 295, Physics, Proton radiotherapy

November 10, 2010 by hgpu

GPU-based Iterative Cone Beam CT Reconstruction Using Tight Frame Regularization

Xun Jia, Bin Dong, Yifei Lou, Steve B. Jiang

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Tags: Computed tomography, CUDA, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 10, 2010 by hgpu

Faster Radix Sort via Virtual Memory and Write-Combining

Jan Wassenberg, Peter Sanders

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Tags: Algorithms, Computer science, Data Structures and Algorithms, nVidia, nVidia GeForce GTX 480, Sorting

November 10, 2010 by hgpu

Astrophysical Supercomputing with GPUs: Critical Decisions for Early Adopters

Christopher J. Fluke, David G. Barnes, Benjamin R. Barsdell, Amr H. Hassan

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Tags: Astrophysics, ATI, ATI Radeon HD 5970, CUDA, Gravitational lensing, Instrumentation and Methods for Astrophysics, N-body simulation, nVidia, nVidia GeForce 8800 GT, OpenCL, Tesla C1060

November 10, 2010 by hgpu

GPU-based Low-dose 4DCT Reconstruction via Temporal Non-local Means

Zhen Tian, Xun Jia, Steve B. Jiang

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Tags: Computed tomography, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 10, 2010 by hgpu

Compressive Phase Contrast Tomography

F. R. N. C. Maia, A. MacDowell, S. Marchesini, H. A. Padmore, D. Y. Parkinson, J. Pien, A. Schirotzek, C. Yang

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Tags: CUDA, FFT, nVidia, Optics, Physics, Radon transform, Tesla C1060, Tomography

November 10, 2010 by hgpu

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

A. Zhmurov, R. I. Dima, Y. Kholodov, V. Barsegov

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Tags: Bioinformatics, Biomolecular assemblies, Chemistry, CUDA, Dynamic force spectroscopy, Langevin dynamics, Molecular dynamics, nVidia, nVidia GeForce GTX 295

November 9, 2010 by hgpu

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

Zhen Tian, Xun Jia, Kehong Yuan, Tinsu Pan, Steve B. Jiang

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Tags: Computed tomography, CT, CUBLAS, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Physics, Tesla C1060

November 9, 2010 by hgpu

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

Felipe A. Cruz, Simon K. Layton, Lorena A. Barba

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Tags: Computer science, CUDA, Fast summation methods, Mathematical Software, nVidia, Tesla C1060

November 9, 2010 by hgpu

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Christian Trott, Lars Winterfeld

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Tags: Computational Physics, Condensed matter, CUDA, GPU cluster, Materials Science, Molecular dynamics, MPI, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Performance, Physics, Tesla C1060, Tesla S1070

November 9, 2010 by hgpu

Improving many flavor QCD simulations using multiple GPUs

M. Hayakawa, K.-I. Ishikawa, Y. Osaki, S. Takeda, S. Uno, N. Yamada

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Tags: CUDA, High Energy Physics - Lattice, Monte Carlo simulation, nVidia, nVidia GeForce GTX 285, OpenMP, Physics, QCD

November 9, 2010 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

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high performance computing on graphics processing units: hgpu.org

A GPU-based hyperbolic SVD algorithm

A GPU implementation of a track-repeating algorithm for proton radiotherapy dose calculations

GPU-based Iterative Cone Beam CT Reconstruction Using Tight Frame Regularization

Faster Radix Sort via Virtual Memory and Write-Combining

Astrophysical Supercomputing with GPUs: Critical Decisions for Early Adopters

GPU-based Low-dose 4DCT Reconstruction via Temporal Non-local Means

Compressive Phase Contrast Tomography

Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors

GPU-based Low Dose CT Reconstruction via Edge-preserving Total Variation Regularization

How to obtain efficient GPU kernels: an illustration using FMM & FGT algorithms

General purpose Molecular Dynamics Simulations on GPUs: Issues of Pair Forces and Scaling to large Clusters

Improving many flavor QCD simulations using multiple GPUs

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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