high performance computing on graphics processing units: hgpu.org

Applications

Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes

Tao Liao, Yongjie Zhang, Peter M. Kekenes-Huskey, Yuhui Cheng, Anushka Michailova, Andrew D. McCulloch, Michael Holst, J. Andrew McCammon

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Tags: Algorithms, Bioinformatics, Biology, Biomolecules, CUDA, KD-tree, Molecular surface, nVidia, nVidia GeForce GTX 680

August 9, 2013 by hgpu

GPU Accelerated Pattern Matching Algorithm for DNA Sequences to Detect Cancer using CUDA

Snehal P. Adey

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Tags: Bioinformatics, Biology, CUDA, Medicine, nVidia, Tesla C2070, Thesis

August 7, 2013 by hgpu

Efficient bayesian multi-view deconvolution

Stephan Preibisch, Fernando Amat, Evangelia Stamataki, Mihail Sarov, Eugene Myers, Pavel Tomancak

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Tags: Bayesian, Biology, CUDA, Microscopy, nVidia, nVidia Quadro 4000, Package

August 6, 2013 by hgpu

Parallel birth and death process for cell nuclei extraction in histopathology images

Christophe Avenel, Pierre Fortin, Dominique Bereziat

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Tags: Biology, CUDA, Medicine, nVidia, Tesla C2070

July 25, 2013 by hgpu

CFMDS: CUDA-based fast multidimensional scaling for genome-scale data

Sungin Park, Soo-Yong Shin, Kyu-Baek Hwang

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Tags: Bioinformatics, Biology, CUDA, Genetics, Multidimensional scaling, nVidia, Package

June 21, 2013 by hgpu

Performance of a GPU-based Direct Summation Algorithm for Computation of Small Angle Scattering Profile

Konstantin Berlin, Nail A. Gumerov, Ramani Duraiswami, David Fushman

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Tags: Algorithms, Biology, Biomolecules, Fast multipole method, Macromolecule, nVidia, nVidia GeForce GT 330 M, nVidia GeForce GTX 295, OpenCL, RNA

June 12, 2013 by hgpu

GPU Multiple Sequence Alignment Fourier-Space Cross-Correlation Alignment

Matthias Alexander Lee

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Tags: Bioinformatics, Biology, Computational Complexity, CUDA, nVidia, Package, Python, RNA, Sequence alignment, Signal processing

May 31, 2013 by hgpu

Improved Performance of CaFE and IRIS Model Fitting Using CUDA

Dylan Jackson

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Tags: Biology, Biomolecules, CUDA, nVidia, nVidia GeForce GTX 680, Sensing, Thesis

May 31, 2013 by hgpu

Rapid Computation of Sodium Bioscales Using GPU-Accelerated Image Reconstruction

Ian C. Atkinson, Geng Liu, Nady Obeid, Keith R. Thulborn, Wen-mei Hwu

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Tags: Algorithms, Biology, CUDA, FFT, Image reconstruction, Magnetic resonance imaging, MRI, nVidia, Tesla C2050

May 27, 2013 by hgpu

GPU-accelerated protein family identification for metagenomics

Changjun Wu, Ananth Kalyanaraman

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Tags: Biology, Clustering, CUDA, Graph theory, nVidia, Tesla K20

May 25, 2013 by hgpu

A Distributed CPU-GPU Framework for Pairwise Alignments on Large-Scale Sequence Datasets

Da Li, Kittisak Sajjapongse, Huan Truong, Gavin Conant, Michela Becchi

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Tags: Bioinformatics, Biology, Computational biology, CUDA, GPU cluster, Heterogeneous systems, MPI, nVidia, nVidia Quadro FX 2000, Sequence alignment, Tesla K20

May 11, 2013 by hgpu

The GPU-based High-performance Pattern-matching Algorithm for Intrusion Detection

Dongliang Xu, Hongli Zhang, Yujian Fan

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Tags: Biology, Computer science, CUDA, Information Retrieval, nVidia, nVidia GeForce 9800 GTS, nVidia GeForce GTX 570, Security, String matching

May 11, 2013 by hgpu

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Accurate Models of NVIDIA Tensor Cores

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Applications

Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes

GPU Accelerated Pattern Matching Algorithm for DNA Sequences to Detect Cancer using CUDA

Efficient bayesian multi-view deconvolution

Parallel birth and death process for cell nuclei extraction in histopathology images

CFMDS: CUDA-based fast multidimensional scaling for genome-scale data

Performance of a GPU-based Direct Summation Algorithm for Computation of Small Angle Scattering Profile

GPU Multiple Sequence Alignment Fourier-Space Cross-Correlation Alignment

Improved Performance of CaFE and IRIS Model Fitting Using CUDA

Rapid Computation of Sodium Bioscales Using GPU-Accelerated Image Reconstruction

GPU-accelerated protein family identification for metagenomics

A Distributed CPU-GPU Framework for Pairwise Alignments on Large-Scale Sequence Datasets

The GPU-based High-performance Pattern-matching Algorithm for Intrusion Detection

Recent source codes

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

BoltzGen:Toward Universal Binder Design

CUDA-L2: Surpassing cuBLAS Performance for Matrix Multiplication through Reinforcement Learning

cuPilot: A Strategy-Coordinated Multi-agent Framework for CUDA Kernel Evolution

MATLAB Tensor Core models

Most viewed papers (last 30 days)