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Pairwise Sequence Alignment with Gaps with GPU

Thomas C. Carroll, Jude-Thaddeus Ojiaku, Prudence W.H. Wong

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 650, OpenCL, Sequence alignment

October 27, 2015 by hgpu

Neurokernel: An Open Source Platform for Emulating the Fruit Fly Brain

Lev E. Givon, Aurel A. Lazar

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Tags: Biology, Computer science, CUDA, nVidia, OpenMPI, Tesla K20

October 22, 2015 by hgpu

Accelerating Protein Structure Prediction using Particle Swarm Optimization on GPU

Hamed Khakzad, Yasaman Karami, Seyed Shahriar Arab

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Tags: Algorithms, Bioinformatics, Biology, CUDA, nVidia, Particle swarm optimization, Sequence alignment, Tesla C1060

July 24, 2015 by hgpu

Multiple String Matching on a GPU using CUDAs

Charalampos S. Kouzinopoulos, Panagiotis D. Michailidis, Konstantinos G. Margaritis

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Tags: Algorithms, Biology, Computer science, CUDA, nVidia, nVidia GeForce GTX 280, String matching

July 10, 2015 by hgpu

Modelling the Formation of Ordered Acentrosomal Microtubule Arrays

Alexander Ross Mace

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Tags: Biology, Computer science, Monte Carlo simulation, OpenCL, Probability, Thesis

July 3, 2015 by hgpu

Improving the Mapping of Smith-Waterman Sequence Database Searches onto CUDA-Enabled GPUs

Liang-Tsung Huang, Chao-Chin Wu, Lien-Fu Lai, Yun-Ju Li

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Tags: Bioinformatics, Biology, CUDA, Databases, nVidia, Sequence alignment, Smith-Waterman algorithm, Tesla C1060, Tesla K20

June 30, 2015 by hgpu

Concurrent Task Execution on the Intel Xeon Phi

Yucheng Zhu

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Tags: Bioinformatics, Biology, Computer science, CUDA, Intel Xeon Phi, nVidia, OpenMP, Sequence alignment, Smith-Waterman algorithm, Tesla K20, Thesis

June 22, 2015 by hgpu

Comparative Study of the Parallelization of the Smith-Waterman Algorithm on OpenMP and Cuda C

Amadou Chaibou, Oumarou Sie

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 670, OpenMP, Sequence alignment, Smith-Waterman algorithm

June 22, 2015 by hgpu

Implementation of K-shortest Path Algorithm in GPU Using CUDA

Avadhesh Pratap Singh, Dhirendra Pratap Singh

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, Sequence alignment, Tesla C2075

June 7, 2015 by hgpu

Genetically Improved BarraCUDA

W. B. Langdon, Brian Yee Hong Lam

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Tags: Algorithms, Benchmarking, Biology, CUDA, Genomics, nVidia, nVidia GeForce GT 730, Package, Tesla K20, Tesla K40, Tesla K80

June 1, 2015 by hgpu

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

Sven Warris, Feyruz Yalcin, Katherine J. L. Jackson, Jan Peter Nap

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C1060

April 7, 2015 by hgpu

Accelerating complex brain-model simulations on GPU platforms

H.A. Du Nguyen, Zaid Al-Ars, Georgios Smaragdos, Christos Strydis

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Tags: Biology, CUDA, nVidia, nVidia GeForce GT 640, nVidia GeForce GTX 480, Tesla C2075, Tesla K20

March 30, 2015 by hgpu

Accelerating Sparse Matrix-Matrix Multiplication with GPU Tensor Cores

Heterogeneous parallel computing for image registration and linear algebra applications

Ignite-GPU: a GPU-enabled in-memory computing architecture on clusters

Ignite-GPU: a GPU-enabled in-memory computing architecture on clusters

PERCH 2.0: Fast and High-Quality GPU-based Perception via Search for Object Pose Estimation

PERCH 2.0: Fast and Accurate GPU-based Perception via Search for Object Pose Estimation

AnyHLS: High-Level Synthesis with Partial Evaluation

AnyHLS: High-Level Synthesis with Partial Evaluation

Futhark

Bounds Checking on GPU

OpenSBLI: Automated code-generation for heterogeneous computing architectures applied to compressible fluid dynamics on structured grids

OpenSBLI: Automated code-generation for heterogeneous computing architectures applied to compressible fluid dynamics on structured grids

Stanza: A Python NLP Library for Many Human Languages

Biomedical and Clinical English Model Packages in the Stanza Python NLP Library

Benchmark for sparse-dense matrix multiplications

Optimizing Block-Sparse Matrix Multiplications on CUDA with TVM

Darknet on OpenCL: a multi-platform tool for object detection and classification

Darknet on OpenCL: a multi-platform tool for object detection and classification

3DES on Nvidia GPUs

Bit-level Parallelization of 3DES Encryption on GPU

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2020

November

24-27

Naha, Okinawa, Japan

The Fifth International Workshop on GPU Computing and AI (GCA), 2020

2021

January

13-15

Shenzhen, China

2nd International Conference on Frontiers of Intelligent Manufacturing and Automation (CFIMA’21), 2021

2020

December

14-16

Bangkok, Thailand

International Conference on Cyber Physical Systems and IoT (CPSIOT’20), 2020

2020

December

14-16

Bangkok, Thailand

International Conference on Wireless Networks and Embedded Systems (ICWNES’20), 2020

2020

December

14-16

Bangkok, Thailand

International Joint Conference on Signals, Systems and Computers (CSSC’20), 2020

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