high performance computing on graphics processing units: hgpu.org

Applications

Concurrent Task Execution on the Intel Xeon Phi

Yucheng Zhu

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Tags: Bioinformatics, Biology, Computer science, CUDA, Intel Xeon Phi, nVidia, OpenMP, Sequence alignment, Smith-Waterman algorithm, Tesla K20, Thesis

June 22, 2015 by hgpu

Comparative Study of the Parallelization of the Smith-Waterman Algorithm on OpenMP and Cuda C

Amadou Chaibou, Oumarou Sie

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 670, OpenMP, Sequence alignment, Smith-Waterman algorithm

June 22, 2015 by hgpu

Implementation of K-shortest Path Algorithm in GPU Using CUDA

Avadhesh Pratap Singh, Dhirendra Pratap Singh

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Tags: Bioinformatics, Biology, Computer science, CUDA, nVidia, Sequence alignment, Tesla C2075

June 7, 2015 by hgpu

Genetically Improved BarraCUDA

W. B. Langdon, Brian Yee Hong Lam

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Tags: Algorithms, Benchmarking, Biology, CUDA, Genomics, nVidia, nVidia GeForce GT 730, Package, Tesla K20, Tesla K40, Tesla K80

June 1, 2015 by hgpu

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

Sven Warris, Feyruz Yalcin, Katherine J. L. Jackson, Jan Peter Nap

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Tags: Bioinformatics, Biology, CUDA, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 295, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C1060

April 7, 2015 by hgpu

Accelerating complex brain-model simulations on GPU platforms

H.A. Du Nguyen, Zaid Al-Ars, Georgios Smaragdos, Christos Strydis

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Tags: Biology, CUDA, nVidia, nVidia GeForce GT 640, nVidia GeForce GTX 480, Tesla C2075, Tesla K20

March 30, 2015 by hgpu

Real-time multi-view deconvolution

Benjamin Schmid, Jan Huisken

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Tags: Biology, CUDA, Microscopy, nVidia, nVidia GeForce GTX Titan, Package

March 30, 2015 by hgpu

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay

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Tags: Bioinformatics, Biology, CUDA, nVidia, Package, Sequence alignment, Tesla K20

March 28, 2015 by hgpu

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Johannes Koster

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Tags: Algorithms, Bayesian, Bioinformatics, Biology, Filtering, Next-Generation sequencing, nVidia, nVidia GeForce GTX 580, nVidia GeForce GTX 780, OpenCL, Package, Thesis

March 23, 2015 by hgpu

Implementation of Smith-Waterman algorithm in OpenCL for GPUs

Dzmitry Razmyslovich, Guillermo Marcus, Markus Gipp, Marc Zapatka, Andreas Szillus

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Tags: Bioinformatics, Biology, nVidia, nVidia GeForce GTX 480, OpenCL, Package, Sequence alignment, Smith-Waterman algorithm

February 27, 2015 by azhar ali

NMF-mGPU: non-negative matrix factorization on multi-GPU systems

Edgardo Mejia-Roa, Daniel Tabas-Madrid, Javier Setoain, Carlos Garcia, Francisco Tirado, Alberto Pascual-Montano

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Factorization, GPU cluster, MPI, Nonnegative matrix factorization, nVidia, Package, Tesla C1060

February 19, 2015 by hgpu

CAVE-CL: An OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins

Jan Busa Jr., Jan Busa, Shura Hayryan, Chin-Kun Hu, Ming-Chya Wu

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Tags: Algorithms, Biology, Computer physics, Fortran, nVidia, nVidia GeForce GTX 470, OpenCL, Physics, Tesla C1060

February 10, 2015 by hgpu

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HLS4ML

Fast inference of deep neural networks in FPGAs for particle physics

cytonRL: reinforcement learning, deep Q-network, double DQN, dueling DQN, prioritized experience replay

CytonRL: an Efficient Reinforcement Learning Open-source Toolkit Implemented in C++

DLL: Deep Learning Library (DLL) for C++ (ANNs, CNNs, RBMs, DBNs...)

DLL: A Blazing Fast Deep Neural Network Library

HCC: Open Source, Optimizing C++ Compiler for Heterogeneous Compute for the ROCm GPU Computing Platform

Evaluating Performance Tradeoffs on the Radeon Open Compute Platform

pynufft: Python non-uniform fast Fourier transform (NUFFT)

Python Non-Uniform Fast Fourier Transform (PyNUFFT): An Accelerated Non-Cartesian MRI Package on a Heterogeneous Platform (CPU/GPU)

MALBEC: a new CUDA-C ray-tracer in General Relativity

Volna-OP2: OP2 port of the original Volna code

The VOLNA-OP2 Tsunami Code (Version 1.0)

CuLDA_CGS: Solving Large-scale LDA Problems on GPUs

MeterPU: Generic Portable Measurement Framework for Multicore CPU and Multi-GPU Systems

Programming Abstractions and Optimization Techniques for GPU-based Heterogeneous Systems

GHOST: General, Hybrid and Optimized Sparse Toolkit

Chebyshev Filter Diagonalization on Modern Manycore Processors and GPGPUs

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2018

August

06-07

Osaka, Japan

International Conference on Biomedicine & Pharmacotherapy, 2018

2018

June

28-30

Bangkok

8th International Workshop on Computer Science and Engineering (WCSE’18), 2018

2018

October

15-16

Helsinki, Finland

International Conference on Robotics, Artificial Intelligence, Automation and Mechatronics, 2018

2018

June

27-29

No.2 Chong Wen Road, Nan An District, Chongqing 400065, P. R. China

The 3rd IEEE International Conference on Image, Vision and Computing (ICIVC), 2018

2018

June

23-25

Room 301, 2nd Floor, No.2 Teaching Building, West Area of the campus, No. 388 Lumo Road,Wuhan, P.R. China

The 2th International Conference on Robotics and Automation Sciences (ICRAS), 2018

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high performance computing on graphics processing units: hgpu.org

Applications

Concurrent Task Execution on the Intel Xeon Phi

Comparative Study of the Parallelization of the Smith-Waterman Algorithm on OpenMP and Cuda C

Implementation of K-shortest Path Algorithm in GPU Using CUDA

Genetically Improved BarraCUDA

Flexible, Fast and Accurate Sequence Alignment Profiling on GPGPU with PaSWAS

Accelerating complex brain-model simulations on GPU platforms

Real-time multi-view deconvolution

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

Parallelization, Scalability, and Reproducibility in Next-Generation Sequencing Analysis

Implementation of Smith-Waterman algorithm in OpenCL for GPUs

NMF-mGPU: non-negative matrix factorization on multi-GPU systems

CAVE-CL: An OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins

Recent source codes

HLS4ML

cytonRL: reinforcement learning, deep Q-network, double DQN, dueling DQN, prioritized experience replay

DLL: Deep Learning Library (DLL) for C++ (ANNs, CNNs, RBMs, DBNs...)

HCC: Open Source, Optimizing C++ Compiler for Heterogeneous Compute for the ROCm GPU Computing Platform

pynufft: Python non-uniform fast Fourier transform (NUFFT)

MALBEC: a new CUDA-C ray-tracer in General Relativity

Volna-OP2: OP2 port of the original Volna code

CuLDA_CGS: Solving Large-scale LDA Problems on GPUs

MeterPU: Generic Portable Measurement Framework for Multicore CPU and Multi-GPU Systems

GHOST: General, Hybrid and Optimized Sparse Toolkit

Most viewed papers (last 30 days)

Featured events

International Conference on Biomedicine & Pharmacotherapy, 2018

8th International Workshop on Computer Science and Engineering (WCSE’18), 2018

International Conference on Robotics, Artificial Intelligence, Automation and Mechatronics, 2018

The 3rd IEEE International Conference on Image, Vision and Computing (ICIVC), 2018

The 2th International Conference on Robotics and Automation Sciences (ICRAS), 2018