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Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis

Jesus Perez Serrano, Edans Flavius De Oliveira Sandes, Alba Cristina Magalhaes Alves de Melo, Manuel Ujaldon

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Tags: Bioinformatics, Biology, CUDA, Energy-efficient computing, nVidia, nVidia GeForce GTX 980, Performance, Smith-Waterman algorithm

June 10, 2017 by hgpu

GPUMap: A Transparently GPU-Accelerated Map Function

Ivan Pachev

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Tags: Computer science, CUDA, Distributed computing, Java, MapReduce, nVidia, nVidia GeForce GTX 980, Python, Thesis

May 22, 2017 by hgpu

Group Marching Tree: Sampling-Based Approximately Optimal Motion Planning on GPUs

Brian Ichter, Edward Schmerling, Marco Pavone

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 980, nVidia Tegra TX1, Robotics

May 18, 2017 by hgpu

A hybrid CPU-GPU parallelization scheme of variable neighborhood search for inventory optimization problems

Nikolaos Antoniadis, Angelo Sifaleras

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Tags: Computer science, Metaheuristics, Neural and Evolutionary Computing, nVidia, nVidia GeForce GTX 960, nVidia GeForce GTX 980, OpenACC, OpenMP, Optimization

April 20, 2017 by hgpu

Machine Learning from Streaming Data in Heterogeneous Computing Environments

Yusuf Guven Toprakkiran

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Tags: Algorithms, AMD Radeon R9 Fury, ATI, Computer science, Heterogeneous systems, Machine learning, nVidia, nVidia GeForce GTX 980, OpenCL, Thesis

April 11, 2017 by hgpu

Energy conservation techniques for GPU computing

Xinxin Mei

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Tags: Computer science, CUDA, GPU cluster, nVidia, nVidia GeForce GTX 780, nVidia GeForce GTX 980, Task scheduling, Thesis

March 28, 2017 by hgpu

APUNet: Revitalizing GPU as Packet Processing Accelerator

Younghwan Go, Muhammad Jamshed, YoungGyoun Moon, Changho Hwang, KyoungSoo Park

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Tags: Algorithms, AMD, APU, ATI, Computer science, nVidia, nVidia GeForce GTX 980, OpenCL, Performance

March 28, 2017 by hgpu

Acceleration of low-latency gravitational wave searches using Maxwell-microarchitecture GPUs

Xiangyu Guo, Qi Chu, Shin Kee Chung, Zhihui Du, Linqing Wen

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Tags: Astrophysics, CUDA, Filtering, Gravitation, Gravitational waves, nVidia, nVidia GeForce GTX 980

February 10, 2017 by hgpu

A GPU-Based Solution to Fast Calculation of Betweenness Centrality on Large Weighted Networks

Rui Fan, Ke Xu, Jichang Zhao

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 980, Package

January 26, 2017 by hgpu

GPGPU Performance Estimation with Core and Memory Frequency Scaling

Qiang Wang, Xiaowen Chu

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Tags: Computer science, CUDA, Hardware, nVidia, nVidia GeForce GTX 980, Performance

January 23, 2017 by hgpu

A Comparison of GPU Execution Time Prediction using Machine Learning and Analytical Modeling

Marcos Amaris, Raphael Y. de Camargo, Mohamed Dyab, Alfredo Goldman, Denis Trystram

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Tags: Analytical model, Benchmarking, Computer science, Heterogeneous systems, Machine learning, nVidia, nVidia GeForce GTX 680, nVidia GeForce GTX 970, nVidia GeForce GTX 980, nVidia GeForce GTX Titan, nVidia GeForce GTX Titan Black, nVidia GeForce GTX Titan X, nVidia Quadro K5200, Package, Performance, Tesla K20, Tesla K40

December 6, 2016 by hgpu

GPU-accelerated algorithms for many-particle continuous-time quantum walks

Enrico Piccinini, Claudia Benedetti, Ilaria Siloi, Matteo G. A. Paris, Paolo Bordone

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Tags: Algorithms, Benchmarking, Computational Physics, CUDA, nVidia, nVidia GeForce GTX 980, OpenMP, Physics, Quantum computing, Quantum Physics, Quantum walks, Tesla K40, Tesla K80, Tesla M2050

December 6, 2016 by hgpu

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DeepMon: Mobile GPU-based Deep Learning Framework for Continuous Vision Applications

OpenAdSCL

Scalar collapse in AdS with an OpenCL open source code

Rgtsvm: Support Vector Machines on a GPU in R

Kapre: On-GPU Audio Preprocessing Layers for a Quick Implementation of Deep Neural Network Models with Keras

gloo: Collective communications library with various primitives for multi-machine training

Accurate, Large Minibatch SGD: Training ImageNet in 1 Hour

MobiRNN: Efficient Recurrent Neural Network Execution on Mobile GPU

CELES: CUDA-accelerated electromagnetic scattering by large ensembles of spheres

CELES: CUDA-accelerated simulation of electromagnetic scattering by large ensembles of spheres

Boda: A C++ Framework for Efficient Experiments in Computer Vision [WIP]

Implementing Efficient, Portable Computations for Machine Learning

Parallel and in-process compilation of individuals for genetic programming on GPU

ESPRESO: Highly Parallel Solvers for Engineering Applications

Intel Xeon Phi acceleration of Hybrid Total FETI solver

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high performance computing on graphics processing units: hgpu.org

Smith-Waterman Acceleration in Multi-GPUs: A Performance per Watt Analysis

GPUMap: A Transparently GPU-Accelerated Map Function

Group Marching Tree: Sampling-Based Approximately Optimal Motion Planning on GPUs

A hybrid CPU-GPU parallelization scheme of variable neighborhood search for inventory optimization problems

Machine Learning from Streaming Data in Heterogeneous Computing Environments

Energy conservation techniques for GPU computing

APUNet: Revitalizing GPU as Packet Processing Accelerator

Acceleration of low-latency gravitational wave searches using Maxwell-microarchitecture GPUs

A GPU-Based Solution to Fast Calculation of Betweenness Centrality on Large Weighted Networks

GPGPU Performance Estimation with Core and Memory Frequency Scaling

A Comparison of GPU Execution Time Prediction using Machine Learning and Analytical Modeling

GPU-accelerated algorithms for many-particle continuous-time quantum walks

Recent source codes

DeepMon: Mobile GPU-based Deep Learning Framework for Continuous Vision Applications

OpenAdSCL

Rgtsvm: Support Vector Machines on a GPU in R

Kapre: On-GPU Audio Preprocessing Layers for a Quick Implementation of Deep Neural Network Models with Keras

gloo: Collective communications library with various primitives for multi-machine training

MobiRNN: Efficient Recurrent Neural Network Execution on Mobile GPU

CELES: CUDA-accelerated electromagnetic scattering by large ensembles of spheres

Boda: A C++ Framework for Efficient Experiments in Computer Vision [WIP]

Parallel and in-process compilation of individuals for genetic programming on GPU

ESPRESO: Highly Parallel Solvers for Engineering Applications

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4th International Conference on Biomedical and Bioinformatics Engineering (ICBBE), 2017

9th International Conference on Signal Processing Systems (ICSPS), 2017

The 5th International conference on Control, Mechatronics and Automation (ICCMA), 2017

8th International Conference on Biology, Environment and Chemistry (ICBEC), 2017

2nd International Conference on Communication and Information Systems (ICCIS), 2017