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Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, ATI, Bioinformatics, Biology, Computer science, CUDA, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Programming Languages, Smith-Waterman algorithm, SYCL, Tesla V100

September 24, 2023 by hgpu

Improving Energy Efficiency of Basic Linear Algebra Routines on Heterogeneous Systems with Multiple GPUs

Hadi Zamani Sabzi

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Tags: Algorithms, Computer science, CUDA, Energy-efficient computing, Factorization, Heterogeneous systems, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 1660, nVidia GeForce GTX 980, Thesis

May 21, 2023 by hgpu

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, Heterogeneous systems, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, OpenCL, Sequence alignment, SYCL, Tesla V100

November 27, 2022 by hgpu

Novel Parallel Approaches to Efficiently Solve Spatial Problems on Heterogeneous CPU-GPU Systems

Andrés Jesús Sánchez Fernández

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Tags: Algorithms, Computer science, Databases, Heterogeneous systems, nVidia, nVidia GeForce GT 1030, nVidia GeForce GTX 1050 Ti, nVidia GeForce GTX 980, Thesis

July 3, 2022 by hgpu

BAT: A Benchmark suite for AutoTuners

Ingunn Sund, Knut A. Kirkhorn, Jacob O. Tørring, Anne C. Elster

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Tags: Auto-Tuning, Benchmarking, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 980, Package, Performance, Tesla T4, Tesla V100

November 21, 2021 by hgpu

LS-CAT: A Large-Scale CUDA AutoTuning Dataset

Lars Bjertnes, Jacob O. Tørring, Anne C. Elster

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Tags: Benchmarking, Computer science, CUDA, Databases, Linear Algebra, Machine learning, nVidia, nVidia GeForce GTX 980, Tesla T4

April 5, 2021 by hgpu

Acceleration of Intrusion Detection in Encrypted Network Traffic Using Heterogeneous Hardware

Eva Papadogiannaki, Sotiris Ioannidis

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Tags: Computer science, Filtering, Heterogeneous systems, Intel UHD 630, nVidia, nVidia GeForce GTX 980, OpenCL, Security

February 28, 2021 by hgpu

Efficient Nearest-Neighbor Data Sharing in GPUs

Negin Nematollahi, Mohammad Sadrosadati, Hajar Falahati, Marzieh Barkhordar, Mario Paulo Drumond, Hamid Sarbazi-Azad, Babak Falsafi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 980, Stencil computation

January 10, 2021 by hgpu

Efficient Sparse-Dense Matrix-Matrix Multiplication on GPUs Using the Customized Sparse Storage Format

Shaohuai Shi, Qiang Wang, Xiaowen Chu

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Tags: Algorithms, Computer science, CUBLAS, CUDA, Matrix multiplication, nVidia, nVidia GeForce GTX 980, nVidia GeForce GTX Titan X, Package, Sparse matrix, Tesla P100

June 7, 2020 by hgpu

Memory-Efficient Object-Oriented Programming on GPUs

Matthias Springer

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 940 M, nVidia GeForce GTX 980, nVidia GeForce GTX Titan XP, Package, Programming Languages, Thesis

August 25, 2019 by hgpu

Automatic generation of warp-level primitives and atomic instructions for fast and portable parallel reduction on GPUs

Simon Garcia De Gonzalo, Sitao Huang, Juan Gomez-Luna, Simon Hammond, Onur Mutlu, Wen-mei Hwu

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 980, Performance, performance portability, Tesla K40, Tesla P100

May 26, 2019 by hgpu

Modeling and Evaluation of Synchronous Stochastic Gradient Descent in Distributed Deep Learning on Multiple GPUs

Shaohuai Shi, Qiang Wang, Xiaowen Chu, Bo Li

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Tags: Artificial intelligence, Benchmarking, Computer science, CUDA, Deep learning, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, Package, Performance, Tesla K80

May 12, 2018 by hgpu

Performance Study of GPU-based Joins

Efficiently Processing Large Relational Joins on GPUs

GenVectorX: A performance-portable SYCL library for Lorentz Vectors operations

bib boi: Tools to help with LaTeX paper writing

Compiler-centric across-stack deep learning acceleration

Kernel Tuner

Testing and Mutation Testing for GPU Kernels

CuPBoP-AMD: Extending CUDA to AMD Platforms

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

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high performance computing on graphics processing units: hgpu.org

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Improving Energy Efficiency of Basic Linear Algebra Routines on Heterogeneous Systems with Multiple GPUs

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Novel Parallel Approaches to Efficiently Solve Spatial Problems on Heterogeneous CPU-GPU Systems

BAT: A Benchmark suite for AutoTuners

LS-CAT: A Large-Scale CUDA AutoTuning Dataset

Acceleration of Intrusion Detection in Encrypted Network Traffic Using Heterogeneous Hardware

Efficient Nearest-Neighbor Data Sharing in GPUs

Efficient Sparse-Dense Matrix-Matrix Multiplication on GPUs Using the Customized Sparse Storage Format

Memory-Efficient Object-Oriented Programming on GPUs

Automatic generation of warp-level primitives and atomic instructions for fast and portable parallel reduction on GPUs

Modeling and Evaluation of Synchronous Stochastic Gradient Descent in Distributed Deep Learning on Multiple GPUs

Recent source codes

Performance Study of GPU-based Joins

GenVectorX: A performance-portable SYCL library for Lorentz Vectors operations

bib boi: Tools to help with LaTeX paper writing

Kernel Tuner

CuPBoP-AMD: Extending CUDA to AMD Platforms

gossip: Efficient Communication Primitives for Multi-GPU Systems

GT4Py: GridTools for Python

miniBUDE: A BUDE virtual-screening benchmark, in many programming models

AUCMEDI: a framework for Automated Classification of Medical Images

Creating a Dataset for High-Performance Computing Code Translation using LLMs: A Bridge Between OpenMP Fortran and C+

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