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Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

Manuel Costanzo, Enzo Rucci, Carlos García-Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, AMD Radeon RX Vega 6, ATI, Bioinformatics, Biology, Computer science, CUDA, Databases, Heterogeneous systems, HPC, Intel, Intel Arc A770, Intel UHD 630, Intel UHD 770, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Package, performance portability, SYCL, Tesla V100

December 15, 2024 by hgpu

Anatomizing Deep Learning Inference in Web Browsers

Qipeng Wang, Shiqi Jiang, Zhenpeng Chen, Xu Cao, Yuanchun Li, Aoyu Li, Yun Ma, Ting Cao, Xuanzhe Liu

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Tags: Computer science, CUDA, Deep learning, nVidia, nVidia GeForce GTX 1060, nVidia GeForce GTX 980, nVidia GeForce RTX 2060, OpenCL, Package, Performance, TensorFlow

August 18, 2024 by hgpu

Assessing opportunities of SYCL for biological sequence alignment on GPU-based systems

Manuel Costanzo, Enzo Rucci, Carlos García-Sanchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, AMD Radeon RX Vega 6, ATI, Bioinformatics, Biology, Computational biology, CUDA, Heterogeneous systems, Intel Arc A770, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, nVidia V100, oneAPI, Package, Sequence alignment, SYCL

February 25, 2024 by hgpu

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: AMD Radeon RX 6700 XT, ATI, Bioinformatics, Biology, Computer science, CUDA, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3070, nVidia GeForce RTX 3090, oneAPI, Programming Languages, Smith-Waterman algorithm, SYCL, Tesla V100

September 24, 2023 by hgpu

Improving Energy Efficiency of Basic Linear Algebra Routines on Heterogeneous Systems with Multiple GPUs

Hadi Zamani Sabzi

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Tags: Algorithms, Computer science, CUDA, Energy-efficient computing, Factorization, Heterogeneous systems, Linear Algebra, Matrix multiplication, nVidia, nVidia GeForce GTX 1660, nVidia GeForce GTX 980, Thesis

May 21, 2023 by hgpu

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Manuel Costanzo, Enzo Rucci, Carlos García Sánchez, Marcelo Naiouf, Manuel Prieto-Matías

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, Heterogeneous systems, Intel, Intel UHD 630, nVidia, nVidia GeForce GTX 1080, nVidia GeForce GTX 980, nVidia GeForce RTX 2070, nVidia GeForce RTX 3090, OpenCL, Sequence alignment, SYCL, Tesla V100

November 27, 2022 by hgpu

Novel Parallel Approaches to Efficiently Solve Spatial Problems on Heterogeneous CPU-GPU Systems

Andrés Jesús Sánchez Fernández

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Tags: Algorithms, Computer science, Databases, Heterogeneous systems, nVidia, nVidia GeForce GT 1030, nVidia GeForce GTX 1050 Ti, nVidia GeForce GTX 980, Thesis

July 3, 2022 by hgpu

BAT: A Benchmark suite for AutoTuners

Ingunn Sund, Knut A. Kirkhorn, Jacob O. Tørring, Anne C. Elster

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Tags: Auto-Tuning, Benchmarking, Computer science, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 980, Package, Performance, Tesla T4, Tesla V100

November 21, 2021 by hgpu

LS-CAT: A Large-Scale CUDA AutoTuning Dataset

Lars Bjertnes, Jacob O. Tørring, Anne C. Elster

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Tags: Benchmarking, Computer science, CUDA, Databases, Linear Algebra, Machine learning, nVidia, nVidia GeForce GTX 980, Tesla T4

April 5, 2021 by hgpu

Acceleration of Intrusion Detection in Encrypted Network Traffic Using Heterogeneous Hardware

Eva Papadogiannaki, Sotiris Ioannidis

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Tags: Computer science, Filtering, Heterogeneous systems, Intel UHD 630, nVidia, nVidia GeForce GTX 980, OpenCL, Security

February 28, 2021 by hgpu

Efficient Nearest-Neighbor Data Sharing in GPUs

Negin Nematollahi, Mohammad Sadrosadati, Hajar Falahati, Marzieh Barkhordar, Mario Paulo Drumond, Hamid Sarbazi-Azad, Babak Falsafi

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 980, Stencil computation

January 10, 2021 by hgpu

Efficient Sparse-Dense Matrix-Matrix Multiplication on GPUs Using the Customized Sparse Storage Format

Shaohuai Shi, Qiang Wang, Xiaowen Chu

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Tags: Algorithms, Computer science, CUBLAS, CUDA, Matrix multiplication, nVidia, nVidia GeForce GTX 980, nVidia GeForce GTX Titan X, Package, Sparse matrix, Tesla P100

June 7, 2020 by hgpu

Efficient GPU Implementation of Multi-Precision Integer Division

ParEval: A Parallel Code Evaluation Benchmark

ParEval-Repo: A Benchmark Suite for Evaluating LLMs with Repository-level HPC Translation Tasks

FlashSparse: Minimizing Computation Redundancy for Fast Sparse Matrix Multiplications on Tensor Cores

Libra: Synergizing CUDA and Tensor Cores for High-Performance Sparse Matrix Multiplication

exa-AMD: Exascale Accelerated Materials Discovery

Accelerated discovery and design of Fe-Co-Zr magnets with tunable magnetic anisotropy through machine learning and parallel computing

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

No More Shading Languages: Compiling C++ to Vulkan Shaders

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

Engineering Supercomputing Platforms for Biomolecular Applications

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

chemtrain-deploy: A parallel and scalable framework for machine learning potentials in million-atom MD simulations

microSYCL: SYCL micro-benchmarks repository

Exploring SYCL as a Portability Layer for High-Performance Computing on CPUs

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high performance computing on graphics processing units: hgpu.org

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

Anatomizing Deep Learning Inference in Web Browsers

Assessing opportunities of SYCL for biological sequence alignment on GPU-based systems

Comparing Performance and Portability between CUDA and SYCL for Protein Database Search on NVIDIA, AMD, and Intel GPUs

Improving Energy Efficiency of Basic Linear Algebra Routines on Heterogeneous Systems with Multiple GPUs

Assessing Opportunities of SYCL and Intel oneAPI for Biological Sequence Alignment

Novel Parallel Approaches to Efficiently Solve Spatial Problems on Heterogeneous CPU-GPU Systems

BAT: A Benchmark suite for AutoTuners

LS-CAT: A Large-Scale CUDA AutoTuning Dataset

Acceleration of Intrusion Detection in Encrypted Network Traffic Using Heterogeneous Hardware

Efficient Nearest-Neighbor Data Sharing in GPUs

Efficient Sparse-Dense Matrix-Matrix Multiplication on GPUs Using the Customized Sparse Storage Format

Recent source codes

Efficient GPU Implementation of Multi-Precision Integer Division

ParEval: A Parallel Code Evaluation Benchmark

FlashSparse: Minimizing Computation Redundancy for Fast Sparse Matrix Multiplications on Tensor Cores

exa-AMD: Exascale Accelerated Materials Discovery

WiLLM: An Open Wireless LLM Communication System

Vcc: the Vulkan Clang Compiler

hpcbench: A set of benchmarking utilities for biomolecular simulation tools

HPCTransCompile: An AI Compiler Generated Dataset for High-Performance CUDA Transpilation and LLM Preliminary Exploration

chemtrain: Training Molecular Dynamics Potentials in JAX

microSYCL: SYCL micro-benchmarks repository

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