high performance computing on graphics processing units: hgpu.org

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Exploiting graphical processing units for data-parallel scientific applications

A. Leist, D. P. Playne, K. A. Hawick

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Tags: Computer science, CUDA, Field equations, Graph theory, nVidia, nVidia GeForce 8800 GTS

November 27, 2010 by hgpu

CUDA-MEME: Accelerating Motif Discovery in Biological Sequences Using CUDA-enabled Graphics Processing Units

Yongchao Liu, Bertil Schmidt, Weiguo Liu, Douglas L. Maskell

Tags: Biology, CUDA, nVidia, nVidia GeForce GTX 280, Pattern recognition

November 27, 2010 by hgpu

Performance Analysis of IBM Cell Broadband Engine on Sequence Alignment

Yang Song, Gregory M. Striemer, Ali Akoglu

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Tags: Bioinformatics, Biology, Cell processor, CUDA, nVidia, Sequence alignment, Smith-Waterman algorithm, Tesla C870

November 27, 2010 by hgpu

Numerical linear algebra on emerging architectures: The PLASMA and MAGMA projects

Emmanuel Agullo, Jim Demmel, Jack Dongarra, Bilel Hadri, Jakub Kurzak, Julien Langou, Hatem Ltaief, Piotr Luszczek, Stanimire Tomov

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Tags: Algorithms, Computer science, Linear Algebra, Matrix multiplication

November 27, 2010 by hgpu

The multikernel: a new OS architecture for scalable multicore systems

Andrew Baumann, Paul Barham, Pierre E. Dagand, Tim Harris, Rebecca Isaacs, Simon Peter, Timothy Roscoe, Adrian Schüpbach, Akhilesh Singhania

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Tags: Computer science, Operating systems

November 27, 2010 by hgpu

Molecular dynamics simulation of complex multiphase flow on a computer cluster with GPUs

Feiguo Chen, Wei Ge, Jinghai Li

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Tags: Chemistry, CUDA, GPU cluster, Molecular dynamics, MPI, nVidia, Tesla C870

November 27, 2010 by hgpu

Solving Sparse Linear Systems on NVIDIA Tesla GPUs

Mingliang Wang, Hector Klie, Manish Parashar, Hari Sudan

Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 280, Sparse matrix, Tesla T10P

November 27, 2010 by hgpu

The Virtual Marathon: Parallel Computing Supports Crowd Simulations

Erdal Yilmaz, Veysi Isler, Yasemin Y. Cetin

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Tags: Computer science, nVidia, nVidia GeForce GTX 280, OpenGL, Visualization

November 27, 2010 by hgpu

Harnessing graphics processors for the fast computation of acoustic likelihoods in speech recognition

Paul R. Dixon, Tasuku Oonishi, Sadaoki Furui

Tags: Acoustics, CUDA, nVidia, Signal processing, Speech recognition

November 27, 2010 by hgpu

Accuracy and performance of graphics processors: A Quantum Monte Carlo application case study

Jeremy S. Meredith, Gonzalo Alvarez, Thomas A. Maier, Thomas C. Schulthess, Jeffrey S. Vetter

Tags: Computer science, Monte Carlo simulation, Performance

November 27, 2010 by hgpu

Evaluating the use of GPUs in liver image segmentation and HMMER database searches

J. P. Walters, V. Balu, S. Kompalli, V. Chaudhary

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Tags: CUDA, Image processing, nVidia, nVidia GeForce 8800 GTX

November 26, 2010 by hgpu

Triangular matrix inversion on Graphics Processing Unit

Florian Ries, Tommaso De Marco, Matteo Zivieri, Roberto Guerrieri

Tags: Computer science, CUDA, Linear Algebra, Matrix inversion, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295

November 26, 2010 by hgpu

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Towards Efficient and Practical GPU Multitasking in the Era of LLM

Bandicoot: C++ library for GPU accelerated linear algebra

Bandicoot: A Templated C++ Library for GPU Linear Algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

The Fused Kernel Library: A C++ API to Develop Highly-Efficient GPU Libraries

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

Block: Balancing Load in LLM Serving with Context, Knowledge and Predictive Scheduling

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

SIGMo: Scalable Isomorphism Graph Matching on GPUs

SIGMo: High-Throughput Batched Subgraph Isomorphism on GPUs for Molecular Matching

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

DGEMM without FP64 Arithmetic – using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

GEAK-agent: LLM-based AI agent, which can write correct and efficient GPU kernels automatically

Geak: Introducing Triton Kernel AI Agent & Evaluation Benchmarks

OpenDwarfs 2025: re-engineered version of the OpenDwarfs benchmark suite, for compatibility with modern platforms

OpenDwarfs 2025: Modernizing the OpenDwarfs Benchmark Suite for Heterogeneous Computing

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high performance computing on graphics processing units: hgpu.org

Applications

Exploiting graphical processing units for data-parallel scientific applications

CUDA-MEME: Accelerating Motif Discovery in Biological Sequences Using CUDA-enabled Graphics Processing Units

Performance Analysis of IBM Cell Broadband Engine on Sequence Alignment

Numerical linear algebra on emerging architectures: The PLASMA and MAGMA projects

The multikernel: a new OS architecture for scalable multicore systems

Molecular dynamics simulation of complex multiphase flow on a computer cluster with GPUs

Solving Sparse Linear Systems on NVIDIA Tesla GPUs

The Virtual Marathon: Parallel Computing Supports Crowd Simulations

Harnessing graphics processors for the fast computation of acoustic likelihoods in speech recognition

Accuracy and performance of graphics processors: A Quantum Monte Carlo application case study

Evaluating the use of GPUs in liver image segmentation and HMMER database searches

Triangular matrix inversion on Graphics Processing Unit

Recent source codes

kvcached: Elastic KV cache for dynamic GPU sharing and efficient multi-LLM inference

Bandicoot: C++ library for GPU accelerated linear algebra

Luthier: Bridging Auto-Tuning and Vendor Libraries for Efficient Deep Learning Inference

Fused Kernel Library (FKL)

Block: Balance Loader of LLM Serving with Context, Knowledge and Predictive Scheduling

GPUHammer: Rowhammer Attacks on GPU Memories are Practical

SIGMo: Scalable Isomorphism Graph Matching on GPUs

DGEMM without FP64 Arithmetic - using FP64 Emulation and FP8 Tensor Cores with Ozaki Scheme

GEAK-agent: LLM-based AI agent, which can write correct and efficient GPU kernels automatically

OpenDwarfs 2025: re-engineered version of the OpenDwarfs benchmark suite, for compatibility with modern platforms

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