high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » paper

Evolution of thread-level parallelism in desktop applications

Geoffrey Blake, Ronald G. Dreslinski, Trevor Mudge, Krisztian Flautner

View

Tags: Benchmarking, Computer science, Measurement techniques, nVidia, nVidia GeForce GT 120, nVidia GeForce GTX 285, nVidia ION

November 7, 2010 by hgpu

GPU-accelerated molecular dynamics simulation for study of liquid crystalline flows

Alfeus Sunarso, Tomohiro Tsuji, Shigeomi Chono

Tags: Computational Physics, Liquid crystals, Molecular dynamics, Physics

November 7, 2010 by hgpu

Data-intensive document clustering on GPU clusters

Yongpeng Zhang, Frank Mueller, Xiaohui Cui, Thomas Potok

View

Download (PDF)

Tags: Computer science, CUDA, Data mining, GPU cluster, nVidia

November 7, 2010 by hgpu

Accelerating epistasis analysis in human genetics with consumer graphics hardware

Nicholas S. Armstrong, Casey Greene, Fabio Cancare, Jason Moore

View

Download (PDF)

Tags: Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 280

November 7, 2010 by hgpu

Real-time 3D registration using GPU

Soon-Yong Park, Sung-In Choi, Jun Kim, Jeong Chae

View

Download (PDF)

Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce GTX 260

November 7, 2010 by hgpu

GPU accelerated simulations of bluff body flows using vortex particle methods

Diego Rossinelli, Michael Bergdorf, Georges-Henri Cottet, Petros Koumoutsakos

View

Download (PDF)

Tags: CUDA, Fluid dynamics, nVidia, nVidia GeForce 8000 GTS, nVidia GeForce 9800 GX2, nVidia Quadro FX 5600, OpenGL

November 7, 2010 by hgpu

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, L. A. Barba, Tsuyoshi Hamada

View

Download (PDF)

Source codes

Tags: Chemistry, CUDA, GPU cluster, Molecular modeling, nVidia, nVidia GeForce GTX 295, Package

November 7, 2010 by hgpu

Efficient nonbonded interactions for molecular dynamics on a graphics processing unit

P. Eastman, V. S. Pande

Tags: Chemistry, Computational chemistry, Molecular dynamics, Solvent effects

November 7, 2010 by hgpu

MDLab: A molecular dynamics simulation prototyping environment

Trevor Cickovski, Santanu Chatterjee, Jacob Wenger, Christopher R. Sweet, Jesus A. Izaguirre

View

Download (PDF)

Source codes

Tags: Chemistry, Computational chemistry, CUDA, Molecular dynamics, nVidia, Package, Python

November 6, 2010 by hgpu

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Yongchao Liu, Bertil Schmidt, Douglas Maskell

View

Download (PDF)

Source codes

Tags: Bioinformatics, Biology, Computational biology, CUDA, nVidia, nVidia GeForce GTX 280, nVidia GeForce GTX 295, Package, Smith-Waterman algorithm

November 6, 2010 by hgpu

Parallel GPU-based data-dependent triangulations

Michal Cervenansky, Zsolt Toth, Juraj Starinsky, Andrej Ferko, Milos Sramek

Tags: Image processing, Image reconstruction

November 6, 2010 by hgpu

Automatic fitting of spiking neuron models to electrophysiological recordings

Cyrille Rossant, Dan F. Goodman, Jonathan Platkiewicz, Romain Brette

View

Download (PDF)

Source codes

Tags: Adaptive threshold, Biology, CUDA, Distributed computing, Neuroscience, nVidia, nVidia GeForce GTX 295, Optimization, Package

November 6, 2010 by hgpu

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

Experiences with implementing Kokkos’ SYCL backend

ROCm's implementation of Gromacs

GROMACS on AMD GPU-Based HPC Platforms: Using SYCL for Performance and Portability

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

See all packages

* * *

high performance computing on graphics processing units: hgpu.org

Applications

Evolution of thread-level parallelism in desktop applications

GPU-accelerated molecular dynamics simulation for study of liquid crystalline flows

Data-intensive document clustering on GPU clusters

Accelerating epistasis analysis in human genetics with consumer graphics hardware

Real-time 3D registration using GPU

GPU accelerated simulations of bluff body flows using vortex particle methods

Biomolecular electrostatics simulation with a parallel FMM-based BEM, using up to 512 GPUs

Efficient nonbonded interactions for molecular dynamics on a graphics processing unit

MDLab: A molecular dynamics simulation prototyping environment

CUDASW++ 2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

Parallel GPU-based data-dependent triangulations

Automatic fitting of spiking neuron models to electrophysiological recordings

Recent source codes

Code examples for paper on SYCL backend of Kokkos - IWOCL 2024

ROCm's implementation of Gromacs

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Most viewed papers (last 30 days)