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Fast k Nearest Neighbor Search using GPU

Vincent Garcia, Eric Debreuve, Michel Barlaud

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce 8800 GTX

October 27, 2010 by hgpu

Sequence alignment with GPU: Performance and design challenges

Gregory M. Striemer, Ali Akoglu

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Source codes

Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C870

October 27, 2010 by hgpu

An improved study of real-time fluid simulation on GPU

Enhua Wu, Youquan Liu, Xuehui Liu

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Tags: Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce FX 5950 Ultra

October 27, 2010 by hgpu

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Package, Sorting

October 27, 2010 by hgpu

GPU accelerated pathfinding

Avi Bleiweiss

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Tags: Artificial intelligence, Computer science, CUDA, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 280, Presentation, Search strategies

October 27, 2010 by hgpu

Mass-spring systems on the GPU

Joachim Georgii, Rudiger Westermann

Tags: Computer science, Mass-spring systems, Physics-based simulation, Rendering

October 27, 2010 by hgpu

Fast parallel GPU-sorting using a hybrid algorithm

E. Sintorn, U. Assarsson

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Tags: Computer science, Data Structures and Algorithms, nVidia, nVidia GeForce 8800 GTX, Sorting

October 27, 2010 by hgpu

GPU-based spatial interaction force simulation

Chris Truszkowski, Benjamin Bishop

Tags: Computer science

October 27, 2010 by hgpu

GPU acceleration of a production molecular docking code

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biophysics, Chemistry, FPGA, Molecular dynamics, nVidia, Tesla C1060

October 27, 2010 by hgpu

Techniques for efficient DCT/IDCT implementation on generic GPU

Bo Fang, Guobin Shen, Shipeng Li, Huifang Chen

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Tags: ATI, ATI Radeon 9700 Pro, Computer science, HLSL, Image processing

October 27, 2010 by hgpu

GPU accelerated molecular dynamics simulation of thermal conductivities

Juekuan Yang, Yujuan Wang, Yunfei Chen

Tags: Computational Physics, Molecular dynamics, nVidia, Physics

October 27, 2010 by hgpu

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

M. J. Harvey, G. Giupponi, G. De Fabritiis

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Tags: Biological Physics, Chemistry, Computational Physics, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

Code Generation for Cryptographic Kernels using Multi-word Modular Arithmetic on GPU

GSParLib

GSParLib: A multi-level programming interface unifying OpenCL and CUDA for expressing stream and data parallelism

Keras Sig: Efficient Path Signature Computation on GPU in Keras 3

KSig: GPU-accelerated computation of popular time series kernels

A User’s Guide to KSig: GPU-Accelerated Computation of the Signature Kernel

IterApp: Iterative Application Skeleton

Boosting Performance of Iterative Applications on GPUs: Kernel Batching with CUDA Graphs

SCALE-Ahead-Of-Time Compilation of CUDA for AMD GPUs

LeetDecoding: A PyTorch Library for Exponentially Decaying Causal Linear Attention with CUDA Implementations

Anari-visionaray

Data Parallel Visualization and Rendering on the RAMSES Supercomputer with ANARI

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

Enhancing Deployment-Time Predictive Model Robustness for Code Analysis and Optimization

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

Fast k Nearest Neighbor Search using GPU

Sequence alignment with GPU: Performance and design challenges

An improved study of real-time fluid simulation on GPU

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

GPU accelerated pathfinding

Mass-spring systems on the GPU

Fast parallel GPU-sorting using a hybrid algorithm

GPU-based spatial interaction force simulation

GPU acceleration of a production molecular docking code

Techniques for efficient DCT/IDCT implementation on generic GPU

GPU accelerated molecular dynamics simulation of thermal conductivities

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

Recent source codes

Code Generation for Cryptographic Kernels using Multi-word Modular Arithmetic on GPU

GSParLib

Keras Sig: Efficient Path Signature Computation on GPU in Keras 3

KSig: GPU-accelerated computation of popular time series kernels

IterApp: Iterative Application Skeleton

SCALE-Ahead-Of-Time Compilation of CUDA for AMD GPUs

LeetDecoding: A PyTorch Library for Exponentially Decaying Causal Linear Attention with CUDA Implementations

Anari-visionaray

PROM: an open-source software framework to enhance the robustness and performance of predictive models against such changes during deployment

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

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