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ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

Huihui Zou, Shanjiang Tang, Ce Yu, Hao Fu, Yusen Li, Wenjie Tang

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Tags: Algorithms, APU, Bioinformatics, Biology, CUDA, Heterogeneous systems, nVidia, nVidia GeForce GTX 750, OpenCL, Sequence alignment, Smith-Waterman algorithm

December 9, 2018 by hgpu

Optimization of a discontinuous finite element solver with OpenCL and StarPU

Philippe Helluy, Laura Mendoza, Bruno Weber

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Tags: Algorithms, Computer science, Hybrid computing, nVidia, nVidia GeForce GTX 1050 Ti, nVidia Quadro P 6000, OpenCL, Package, Task scheduling

December 9, 2018 by hgpu

A Framework for Fast and Efficient Neural Network Compression

Hyeji Kim, Muhammad Umar Karim, Chong-Min Kyung

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Tags: ARM, Caffe, Compression, Computational Complexity, Computer science, Computer vision, Deep learning, Neural networks, nVidia, nVidia GeForce GTX 1080 Ti

December 9, 2018 by hgpu

A Fast and Simple Approach to Merge and Merge Sort using Wide Vector Instructions

Alex Watkins, Oded Green

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Tags: Algorithms, Computer science, Intel Xeon Phi, Sorting

December 2, 2018 by hgpu

Mix-and-Match: A Model-driven Runtime Optimisation Strategy for BFS on GPUs

Merijn Verstraaten, Ana Lucia Varbanescu, Cees de Laat

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Tags: Breadth-First Search, Computer science, CUDA, nVidia, nVidia GeForce GTX Titan X, OpenCL, Package

December 2, 2018 by hgpu

Parallel source code transformation techniques using design patterns

David del Rio Astorga

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Tags: Algorithms, Auto-Tuning, Code generation, Computer science, CUDA, nVidia, nVidia GeForce GTX 680, Tesla K40, Thesis

December 2, 2018 by hgpu

PanJoin: A Partition-based Adaptive Stream Join

Fei Pan, Hans-Arno Jacobsen

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Tags: Algorithms, Computer science, Databases, FPGA, OpenCL

December 2, 2018 by hgpu

Performance Portability Challenges for Fortran Applications

Abigail Hsu, David Neill Asanza, Joseph A. Schoonover, Zach Jibben, Neil N. Carlson, Robert Robey

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Tags: Computer science, CUDA, Finite difference, Fortran, nVidia, OpenMP, Package, performance portability, Tesla P100, Tesla V100

December 2, 2018 by hgpu

CLort: High Throughput and Low Energy Network Intrusion Detection on IoT Devices with Embedded GPUs

Charalampos Stylianopoulos, Linus Johansson, Oskar Olsson, Magnus Almgren

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Tags: ARM, Computer science, IoT, OpenCL, Package, Security

November 25, 2018 by hgpu

SuperNeurons: FFT-based Gradient Sparsification in the Distributed Training of Deep Neural Networks

Linnan Wang, Wei Wu, Yiyang Zhao, Junyu Zhang, Hang Liu, George Bosilca, Jack Dongarra, Maurice Herlihy, Rodrigo Fonseca

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Tags: Compression, Computer science, CUDA, Deep learning, FFT, GPU cluster, Neural networks, nVidia, Package, Tesla P100

November 25, 2018 by hgpu

Modeling Deep Learning Accelerator Enabled GPUs

Md Aamir Raihan, Negar Goli, Tor Aamodt

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Tags: Computer science, CUDA, Deep learning, Hardware Architecture, Machine learning, nVidia, Tesla V100

November 25, 2018 by hgpu

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Enzo Rucci, Carlos Garcia, Guillermo Botella, Armando De Giusti, Marcelo Naiouf, Manuel Prieto-Matias

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Tags: Algorithms, Biology, FPGA, OpenCL, Package, Smith-Waterman algorithm

November 25, 2018 by hgpu

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

Scalable Access-Pattern Aware I/O Acceleration and Multi-Tiered Data Management for HPC and AI Workloads

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

Analyzing the Performance Portability of SYCL across CPUs, GPUs, and Hybrid Systems with Protein Database Search

tdg-benchs: benchmarks used to test the performance of taskgraph

Leveraging the potential of task-based programming with OpenMP task graphs

LLOR: Automatic Repair of OpenMP Programs

LLOR: Automated Repair of OpenMP Programs

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high performance computing on graphics processing units: hgpu.org

Applications

ASW: Accelerating Smith-Waterman Algorithm on Coupled CPU-GPU Architecture

Optimization of a discontinuous finite element solver with OpenCL and StarPU

A Framework for Fast and Efficient Neural Network Compression

A Fast and Simple Approach to Merge and Merge Sort using Wide Vector Instructions

Mix-and-Match: A Model-driven Runtime Optimisation Strategy for BFS on GPUs

Parallel source code transformation techniques using design patterns

PanJoin: A Partition-based Adaptive Stream Join

Performance Portability Challenges for Fortran Applications

CLort: High Throughput and Low Energy Network Intrusion Detection on IoT Devices with Embedded GPUs

SuperNeurons: FFT-based Gradient Sparsification in the Distributed Training of Deep Neural Networks

Modeling Deep Learning Accelerator Enabled GPUs

SWIFOLD: Smith-Waterman implementation on FPGA with OpenCL for long DNA sequences

Recent source codes

DeepSpeed: a deep learning optimization library that makes distributed training and inference easy, efficient, and effective

HPX: a C++ Standard Library for Concurrency and Parallelism

TorchQC: Quantum Dynamics and Machine Learning

Matrix multiplication using Tensor Cores in CUDA

CPP Joules: Energy Measurement tool for CPP/CUDA programs

HPC-Coder-v2

Reproducible Study and Performance Analysis of GPU Programming Paradigms: OpenACC vs. CUDA in Key Linear Algebra Computations

SW#SYCL

tdg-benchs: benchmarks used to test the performance of taskgraph

LLOR: Automatic Repair of OpenMP Programs

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