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BEAGLE: an Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Daniel L. Ayres, Aaron Darling, Derrick J. Zwickl, Peter Beerli, Mark T. Holder, Paul O. Lewis, John P. Huelsenbeck, Fredrik Ronquist, David L. Swofford, Michael P. Cummings, Andrew Rambaut, Marc A. Suchard

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Tags: Bayesian, Bioinformatics, Biology, CUDA, Genetics, nVidia, nVidia GeForce GTX 580

October 25, 2011 by hgpu

An Evolutionary Optimization Strategy Using Graphics Processing Units to Efficiently Investigate Gene-Gene Interactions in Genetic Association Studies

Joel B. Fontanarosa, Yang Dai

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Tags: Algorithms, Biology, CUDA, Evolutionary Computations, Genetics, nVidia, nVidia GeForce GTX 470, Optimization

October 25, 2011 by hgpu

Distributed GPU Password Cracking Research Project

Aleksandar Kasabov, Jochem van Kerkwijk

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Tags: Computer science, Distributed computing, nVidia, nVidia GeForce GTX 295, OpenCL, Security

October 25, 2011 by hgpu

Extending Scala with General Purpose GPU Programming

Reidar Beck, Helge Willum Larsen, Tommy Jensen

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Tags: Benchmarking, Code generation, Compilers, Computer science, Java, nVidia, OpenCL, Package, Tesla C870

October 25, 2011 by hgpu

Development of a Flow Solver with Complex Kinetics on the Graphic Processing Units

Hai P. Le, Jean-Luc Cambier

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Tags: Chemistry, Computational Physics, CUDA, Finite volume method, Fluid dynamics, nVidia, Tesla C2050, Tesla C2070

October 25, 2011 by hgpu

Parallel Implementation of Devanagari Text Line and Word Segmentation Approach on GPU

Brijmohan Singh, Nitin Gupta, Rashi Tyagi, Ankush Mitta, Debashish Ghosh

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce 9500 GT, Pattern recognition

October 24, 2011 by hgpu

Design and implementation of a high-performance stream-based computing platform on multigenerational GPUs

Pablo Lamilla Alvarez

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Tags: Computer science, GPU cluster, nVidia, nVidia GeForce GT 220, OpenCL, Performance, Thesis

October 24, 2011 by hgpu

Breaking DVB-CSA

Erik Tews, Julian Walde, Michael Weiner

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Tags: Algorithms, Computer science, CUDA, nVidia, nVidia GeForce GTX 460, OpenCL, Security

October 24, 2011 by hgpu

ASAMgpu V1.0-a moist fully compressible atmospheric model using graphics processing units (GPUs)

S. Horn

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Tags: Algorithms, Earth and Space Sciences, Geoscience, GLSL, OpenGL, Weather prediction

October 24, 2011 by hgpu

A Hybrid Software Framework for the GPU Acceleration of Multi-Threaded Monte Carlo Applications

Joo Hong Lee, Mark T. Jones, Paul E. Plassmann

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Tags: ATI, ATI Radeon HD 5750, Computer science, Monte Carlo simulation, OpenCL, Pseudo-random number generators

October 24, 2011 by hgpu

APTCC: Auto Parallelizing Translator From C To CUDA

Takehiko Nawataa, Reiji Suda

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Tags: Code generation, Compilers, Computer science, CUDA, nVidia, nVidia GeForce GTX 470, nVidia GeForce GTX 580, Tesla C2050

October 24, 2011 by hgpu

Using OpenCL for Implementing Simple Parallel Graph Algorithms

Michael J. Dinneen, Masoud Khosravani, Andrew Probert

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Tags: Algorithms, Computer science, CUDA, Graph theory, nVidia, OpenCL, Tesla C2050

October 24, 2011 by hgpu

CL4SE: A Context Learning Benchmark For Software Engineering Tasks

CodeScaler: Scaling Code LLM Training and Test-Time Inference via Execution-Free Reward Models

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Dr. Kernel: Reinforcement Learning Done Right for Triton Kernel Generations

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

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high performance computing on graphics processing units: hgpu.org

Applications

BEAGLE: an Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

An Evolutionary Optimization Strategy Using Graphics Processing Units to Efficiently Investigate Gene-Gene Interactions in Genetic Association Studies

Distributed GPU Password Cracking Research Project

Extending Scala with General Purpose GPU Programming

Development of a Flow Solver with Complex Kinetics on the Graphic Processing Units

Parallel Implementation of Devanagari Text Line and Word Segmentation Approach on GPU

Design and implementation of a high-performance stream-based computing platform on multigenerational GPUs

Breaking DVB-CSA

ASAMgpu V1.0-a moist fully compressible atmospheric model using graphics processing units (GPUs)

A Hybrid Software Framework for the GPU Acceleration of Multi-Threaded Monte Carlo Applications

APTCC: Auto Parallelizing Translator From C To CUDA

Using OpenCL for Implementing Simple Parallel Graph Algorithms

Recent source codes

CL4SE: A Context Learning Benchmark For Software Engineering Tasks

CodeScaler: Scaling Code LLM Training and Test-Time Inference via Execution-Free Reward Models

A Safety Report on GPT-5.2, Gemini 3 Pro, Qwen3-VL, Grok 4.1 Fast, Nano Banana Pro, and Seedream 4.5

DICE: Diffusion Large Language Models Excel at Generating CUDA Kernels

KernelGYM & Dr. Kernel: A distributed GPU environment and a collection of RL training methods to support RL for Kernel Generations

Vortex-Optimized Light-weight Toolchain (VOLT)

SciDef: Automated Definition Extraction from Scientific Literature

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

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