high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications » Medicine

A multi-GPU acceleration for 3D imaging of the prostate

E. A. Attardo, A. Borsic, R. J. Halter

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Tags: CUDA, Medicine, nVidia, Tesla S1070, Tomography, Ultrasound

November 12, 2011 by hgpu

Generation of planar radiographs from 3D anatomical models using the GPU

Andre dos Santos Cardoso

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Tags: Algorithms, Benchmarking, CUDA, Data parallelism, Image processing, Image registration, Medicine, nVidia, nVidia GeForce GT 240, Optimization, Thesis

November 10, 2011 by hgpu

A GPU accelerated interactive interface for exploratory functional connectivity analysis of fMRI data

Anders Eklund, Ola Friman, Mats Andersson, Hans Knutsson

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Tags: Medicine, MRI, nVidia, nVidia GeForce GTX 275, OpenCL, Rendering

November 7, 2011 by hgpu

Performance and scalability of Fourier domain optical coherence tomography acceleration using graphics processing units

Jian Li, Pavel Bloch, Jing Xu, Marinko V. Sarunic, Lesley Shannon

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Tags: CUDA, Data acquisition, Medicine, Memory model, nVidia, nVidia GeForce GTX 295, Optics, Tomography

November 6, 2011 by hgpu

True 4D Image Denoising on the GPU

Anders Eklund, Mats Andersson, Hans Knutsson

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Tags: Algorithms, Computational Complexity, Computed tomography, CT, CUDA, FFT, Filtering, Image processing, Medicine, nVidia, nVidia GeForce GTX 285, nVidia GeForce GTX 580, Tomography

November 3, 2011 by hgpu

YaDiV-an open platform for 3D visualization and 3D segmentation of medical data

Karl-Ingo Friese, Philipp Blanke, Franz-Erich Wolter

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Tags: Computer science, Medicine, nVidia, nVidia GeForce 9400 M, nVidia GeForce 9600 M, OpenGL, Package, Virtual reality, Visualization

November 2, 2011 by hgpu

Self-calibration of geometric and radiometric parameters for cone-beam computed tomography

Wolfgang Wein, Alexander Ladikos and Armin Baumgartner

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Tags: Algorithms, ATI, ATI Radeon HD 5870, Computed tomography, CT, Image reconstruction, Medicine, nVidia, nVidia GeForce GTX 580, Tomography

October 27, 2011 by hgpu

Mapping Iterative Medical Imaging Algorithm on Cell Accelerator

Meilian Xu, Parimala Thulasiraman

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Tags: Algorithms, Cell processor, Heterogeneous systems, Image processing, Image recognition, Medicine, Optimization, Tomography

October 22, 2011 by hgpu

On the Usage of GPUs for Efficient Motion Estimation in Medical Image Sequences

Jeyarajan Thiyagalingam, Daniel Goodman, Julia A. Schnabel, Anne Trefethen, Vicente Grau

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Tags: Algorithms, CUDA, Databases, Image processing, Medicine, nVidia, nVidia GeForce GTX 480, Tesla C2070

October 21, 2011 by hgpu

Heterogeneous Accelerated Bioinformatics-Perspectives for Cancer Research

Eric A. Stahlberg, T. Steinke, M. C. Smith, S. Chandrasekaran, B. Chapman

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Tags: Bioinformatics, Biology, CUDA, FPGA, Heterogeneous systems, Medicine, nVidia, OpenCL, Review

October 19, 2011 by hgpu

Fast Surface Extraction and Visualization of Medical Images using OpenCL and GPUs

Erik Smistad, Anne C. Elster, Frank Lindseth

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Tags: Algorithms, Computer science, CUDA, Medicine, nVidia, nVidia GeForce GTX 460, OpenCL, Package, Rendering, Visualization

October 11, 2011 by hgpu

Denoising Volumetric Data on GPU

Jan Horacek, Jan Kolomaznik, Josef Pelikan, Martin Horak

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Tags: Algorithms, Image processing, Medicine, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 275, nVidia GeForce GTX 460, OpenCL, Signal denoising, Tomography

October 10, 2011 by hgpu

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

SimSYCL: A SYCL Implementation Targeting Development, Debugging, Simulation and Conformance

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

gpu_tracker: Python package for tracking and profiling GPU utilization in both desktop and high-performance computing environments

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

94% on CIFAR-10 in 3.29 Seconds on a Single GPU

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

LOOPer: A Learned Automatic Code Optimizer For Polyhedral Compilers

OpenMC Monte Carlo Code

Performance Portable Monte Carlo Particle Transport on Intel, NVIDIA, and AMD GPUs

Polygeist: C/C++ frontend for MLIR

Retargeting and Respecializing GPU Workloads for Performance Portability

Parallel Gaussian process with kernel approximation in CUDA

See all packages

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high performance computing on graphics processing units: hgpu.org

Applications

A multi-GPU acceleration for 3D imaging of the prostate

Generation of planar radiographs from 3D anatomical models using the GPU

A GPU accelerated interactive interface for exploratory functional connectivity analysis of fMRI data

Performance and scalability of Fourier domain optical coherence tomography acceleration using graphics processing units

True 4D Image Denoising on the GPU

YaDiV-an open platform for 3D visualization and 3D segmentation of medical data

Self-calibration of geometric and radiometric parameters for cone-beam computed tomography

Mapping Iterative Medical Imaging Algorithm on Cell Accelerator

On the Usage of GPUs for Efficient Motion Estimation in Medical Image Sequences

Heterogeneous Accelerated Bioinformatics-Perspectives for Cancer Research

Fast Surface Extraction and Visualization of Medical Images using OpenCL and GPUs

Denoising Volumetric Data on GPU

Recent source codes

SimSYCL: Synchronous, single-threaded, library-only SYCL implementation for debugging and verification

GPU plugin for PySCF

QArray

Celerity: High-level C++ for Accelerator Clusters

gpu_tracker: Context manager and CLI that tracks the computational-resource-usage of a code block or shell command, particularly the GPU usage

CIFAR-10 Airbench: 94% on CIFAR-10 in 3.29 second

LOOPer: a polyhedral compiler for expressing fast and portable data parallel algorithms

OpenMC Monte Carlo Code

Polygeist: C/C++ frontend for MLIR

Parallel Gaussian process with kernel approximation in CUDA

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