high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications » Medicine

Correlation analysis on GPU systems using NVIDIA’s CUDA

Daniel Gembris, Markus Neeb, Markus Gipp, Andreas Kugel, Reinhard Manner

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Tags: Computer science, CUDA, FPGA, Magnetic resonance imaging, Medicine, nVidia, nVidia GeForce 8800 GTX

November 17, 2010 by hgpu

A Survey of Medical Image Registration on Multicore and the GPU

Ramtin Shams, Parastoo Sadeghi, Rodney Kennedy, Richard Hartley

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Tags: Image processing, Image registration, Medicine, nVidia, nVidia GeForce GTX 295

November 17, 2010 by hgpu

Fast free-form deformation using graphics processing units

Marc Modat, Gerard R. Ridgway, Zeike A. Taylor, Manja Lehmann, Josephine Barnes, David J. Hawkes, Nick C. Fox, Sebastien Ourselin

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Source codes

Tags: Biology, CUDA, Image processing, Medicine, nVidia, nVidia GeForce 8800 GTX, Package

November 17, 2010 by hgpu

Accelerating simultaneous algebraic reconstruction technique with motion compensation using CUDA-enabled GPU

Wai-Man Pang, Jing Qin, Yuqiang Lu, Yongming Xie, Chee-Kong Chui, Pheng-Ann Heng

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Tags: Computed tomography, CT, CUDA, Image reconstruction, Medicine, Motion compensation, nVidia, nVidia GeForce 8800 GTX

November 17, 2010 by hgpu

Real-time nonlinear finite element computations on GPU – Application to neurosurgical simulation

Grand R. Joldes, Adam Wittek, Karol Miller

Tags: CUDA, Medicine, nVidia, Surgical simulation

November 16, 2010 by hgpu

GPU-based smart visibility techniques for tumor surgery planning

Christoph Kubisch, Christian Tietjen, Bernhard Preim

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Tags: Cg, Medicine, nVidia, nVidia GeForce 9600 GT, OpenGL, Rendering, Visualization

November 16, 2010 by hgpu

GPU-Accelerated Robotic Intra-operative Laparoscopic 3D Reconstruction

Markus Moll, Hsiao-Wei Tang, Luc Van Gool

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Tags: Image reconstruction, Medicine, nVidia, nVidia GeForce 8800 GTS, nVidia GeForce 8800 GTX

November 16, 2010 by hgpu

GPU-based ultra fast dose calculation using a finite pencil beam model

Xuejun Gu, Dongju Choi, Chunhua Men, Hubert Pan, Amitava Majumdar, Steve B. Jiang

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Tags: CUDA, Medical Physics, Medicine, nVidia, nVidia GeForce 9500 GT, nVidia GeForce GTX 285, Physics, Radiotherapy, Tesla C1060, Tesla S1070

November 13, 2010 by hgpu

Implementation and evaluation of various demons deformable image registration algorithms on GPU

Xuejun Gu, Hubert Pan, Yun Liang, Richard Castillo, Deshan Yang, Dongju Choi, Edward Castillo, Amitava Majumdar, Thomas Guerrero, Steve B. Jiang

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Tags: CUDA, Image registration, Medical Physics, Medicine, nVidia, nVidia GeForce GTX 285, Physics, Radiotherapy

November 13, 2010 by hgpu

Development of a GPU-based Monte Carlo dose calculation code for coupled electron-photon transport

Xun Jia, Xuejun Gu, Josep Sempau, Dongju Choi, Amitava Majumdar, Steve B. Jiang

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Tags: CUDA, Medical Physics, Medicine, Monte Carlo simulation, nVidia, Physics, Radiotherapy, Tesla C1060

November 13, 2010 by hgpu

GPU-based Fast Cone Beam CT Reconstruction from Undersampled and Noisy Projection Data via Total Variation

Xun Jia, Yifei Lou, Ruijiang Li, William Y. Song, Steve B. Jiang

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Tags: CT, CUDA, Image reconstruction, Medical Physics, Medicine, nVidia, Tesla C1060

November 12, 2010 by hgpu

GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy

Chunhua Men, Xun Jia, Steve. B. Jiang

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Tags: CUDA, Medical Physics, Medicine, nVidia, nVidia GeForce 9500 GT, nVidia GeForce GTX 285, Physics, Radiotherapy, Tesla C1060

November 12, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Applications

Correlation analysis on GPU systems using NVIDIA’s CUDA

A Survey of Medical Image Registration on Multicore and the GPU

Fast free-form deformation using graphics processing units

Accelerating simultaneous algebraic reconstruction technique with motion compensation using CUDA-enabled GPU

Real-time nonlinear finite element computations on GPU – Application to neurosurgical simulation

GPU-based smart visibility techniques for tumor surgery planning

GPU-Accelerated Robotic Intra-operative Laparoscopic 3D Reconstruction

GPU-based ultra fast dose calculation using a finite pencil beam model

Implementation and evaluation of various demons deformable image registration algorithms on GPU

Development of a GPU-based Monte Carlo dose calculation code for coupled electron-photon transport

GPU-based Fast Cone Beam CT Reconstruction from Undersampled and Noisy Projection Data via Total Variation

GPU-based ultra-fast direct aperture optimization for online adaptive radiation therapy

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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