high performance computing on graphics processing units: hgpu.org

Applications

hgpu.org » Applications

Sequence alignment with GPU: Performance and design challenges

Gregory M. Striemer, Ali Akoglu

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C870

October 27, 2010 by hgpu

An improved study of real-time fluid simulation on GPU

Enhua Wu, Youquan Liu, Xuehui Liu

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Tags: Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, nVidia GeForce FX 5950 Ultra

October 27, 2010 by hgpu

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Package, Sorting

October 27, 2010 by hgpu

GPU accelerated pathfinding

Avi Bleiweiss

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Tags: Artificial intelligence, Computer science, CUDA, nVidia, nVidia GeForce 8800 GT, nVidia GeForce GTX 280, Presentation, Search strategies

October 27, 2010 by hgpu

Mass-spring systems on the GPU

Joachim Georgii, Rudiger Westermann

Tags: Computer science, Mass-spring systems, Physics-based simulation, Rendering

October 27, 2010 by hgpu

Fast parallel GPU-sorting using a hybrid algorithm

E. Sintorn, U. Assarsson

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Tags: Computer science, Data Structures and Algorithms, nVidia, nVidia GeForce 8800 GTX, Sorting

October 27, 2010 by hgpu

GPU-based spatial interaction force simulation

Chris Truszkowski, Benjamin Bishop

Tags: Computer science

October 27, 2010 by hgpu

GPU acceleration of a production molecular docking code

Bharat Sukhwani, Martin C. Herbordt

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Tags: Bioinformatics, Biophysics, Chemistry, FPGA, Molecular dynamics, nVidia, Tesla C1060

October 27, 2010 by hgpu

Techniques for efficient DCT/IDCT implementation on generic GPU

Bo Fang, Guobin Shen, Shipeng Li, Huifang Chen

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Tags: ATI, ATI Radeon 9700 Pro, Computer science, HLSL, Image processing

October 27, 2010 by hgpu

GPU accelerated molecular dynamics simulation of thermal conductivities

Juekuan Yang, Yujuan Wang, Yunfei Chen

Tags: Computational Physics, Molecular dynamics, nVidia, Physics

October 27, 2010 by hgpu

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

M. J. Harvey, G. Giupponi, G. De Fabritiis

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Tags: Biological Physics, Chemistry, Computational Physics, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

Monte Carlo simulations on Graphics Processing Units

Vadim Demchik, Alexei Strelchenko

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Tags: ATI, ATI IL, ATI Radeon HD 4850, ATI Radeon HD 4870, ATI Stream, High Energy Physics - Lattice, Monte Carlo simulation, Physics

October 27, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

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high performance computing on graphics processing units: hgpu.org

Applications

Sequence alignment with GPU: Performance and design challenges

An improved study of real-time fluid simulation on GPU

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

GPU accelerated pathfinding

Mass-spring systems on the GPU

Fast parallel GPU-sorting using a hybrid algorithm

GPU-based spatial interaction force simulation

GPU acceleration of a production molecular docking code

Techniques for efficient DCT/IDCT implementation on generic GPU

GPU accelerated molecular dynamics simulation of thermal conductivities

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

Monte Carlo simulations on Graphics Processing Units

Recent source codes

gpuPairHMM: Ultra-fast GPU-based PairHMM for DNA Variant Calling

Gaia AVU-GSR

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Most viewed papers (last 30 days)