high performance computing on graphics processing units: hgpu.org

Packages

hgpu.org » Applications

G-SNPM – A GPU-based SNP mapping tool

Alessandro Orro, Andrea Manconi, Emanuele Manca, Giuliano Armano, Luciano Milanesi

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Tags: Algorithms, Bioinformatics, Biology, CUDA, Next-Generation sequencing, nVidia, nVidia GeForce GTX 480, Package, Python, Smith-Waterman algorithm

November 14, 2012 by hgpu

Real-Time Surface Extraction and Visualization of Medical Images using OpenCL and GPUs

Erik Smistad, Anne C. Elster, Frank Lindseth

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Tags: ATI, ATI Radeon HD 5870, Medicine, nVidia, nVidia GeForce GTX 470, OpenCL, Package, Tesla C2070, Visualization

November 14, 2012 by hgpu

Parallel execution of a parameter sweep for molecular dynamics simulations in a hybrid GPU/CPU environment

Emmanuel N. Millan, Carlos Garcia Garino, Eduardo M. Bringa

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Tags: Chemistry, CUDA, Molecular dynamics, nVidia, OpenMPI, Package, Ruby, Tesla C2050

November 10, 2012 by hgpu

GPU Virtualization

Kristoffer Robin Stokke

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Tags: Code generation, Computer science, CUDA, nVidia, nVidia GeForce GTX 280, nVidia Quadro NVS 295, Package, Python, Thesis, Virtualization

November 7, 2012 by hgpu

cphVB: A System for Automated Runtime Optimization and Parallelization of Vectorized Applications

Mads Ruben Burgdorff Kristensen, Simon Andreas Frimann Lund, Troels Blum, Brian Vinter

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Tags: Computer science, OpenCL, Optimization, Package, Programming Languages, Python

November 5, 2012 by hgpu

DL: A data layout transformation system for heterogeneous computing

I-Jui Sung, Geng Daniel Liu, Wen-Mei W. Hwu

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Tags: Computer science, Heterogeneous systems, nVidia, nVidia GeForce GTX 480, OpenCL, Package

November 1, 2012 by hgpu

Silhouette Extraction using Graphics Processing Units

Kristian Haga Karstensen

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Tags: Algorithms, Computer vision, Image processing, nVidia, nVidia GeForce GTX 460, OpenCL, Optimization, Package, Thesis

October 29, 2012 by hgpu

Analysis & Design of Efficient Cryptographic Systems

Michael Lehmann

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Tags: Computer science, CUDA, nVidia, nVidia GeForce GTX 580, Package, Security, Stream Ciphers

October 28, 2012 by hgpu

BrainCove: A Tool for Voxel-wise fMRI Brain Connectivity Visualization

A.F. van Dixhoorn, J. Milles, B. van Lew, C.P. Botha

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Tags: Computer science, Filtering, Image generation, MRI, OpenCL, OpenGL, Package, Rendering, Visualization

October 26, 2012 by hgpu

Automatic Generation Of Application-Specific Accelerators for FPGAs from Python Loop Nests

David Sheffield, Michael Anderson, Kurt Keutzer

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Tags: Computer science, Design space exploration, FPGA, Package, Python

October 25, 2012 by hgpu

GPUSync: A Framework for Real-Time GPU Management

Glenn A. Elliott, Bryan C. Ward, James H. Anderson

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Tags: Computer science, Computer vision, CUDA, nVidia, nVidia GeForce GTX 470, Package, Performance

October 23, 2012 by hgpu

A short guide to CUDA C: For physicists with multi-core graphics cards

David Plotzki

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Tags: Computational Physics, Computer science, CUDA, nVidia, nVidia Quadro NVS 3100 M, Package, Physics, Tesla C1060, Tutorial

October 19, 2012 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

See all packages

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high performance computing on graphics processing units: hgpu.org

Packages

G-SNPM – A GPU-based SNP mapping tool

Real-Time Surface Extraction and Visualization of Medical Images using OpenCL and GPUs

Parallel execution of a parameter sweep for molecular dynamics simulations in a hybrid GPU/CPU environment

GPU Virtualization

cphVB: A System for Automated Runtime Optimization and Parallelization of Vectorized Applications

DL: A data layout transformation system for heterogeneous computing

Silhouette Extraction using Graphics Processing Units

Analysis & Design of Efficient Cryptographic Systems

BrainCove: A Tool for Voxel-wise fMRI Brain Connectivity Visualization

Automatic Generation Of Application-Specific Accelerators for FPGAs from Python Loop Nests

GPUSync: A Framework for Real-Time GPU Management

A short guide to CUDA C: For physicists with multi-core graphics cards

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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