high performance computing on graphics processing units: hgpu.org

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On GPU’s viability as a middleware accelerator

Samer A. Kiswany, Abdullah Gharaibeh, Elizeu S. Neto, Matei Ripeanu

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Tags: Computer science, CUDA, Hashing, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Package, Storage system

October 27, 2010 by hgpu

Sequence alignment with GPU: Performance and design challenges

Gregory M. Striemer, Ali Akoglu

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Tags: Bioinformatics, Biology, Computational biology, Computer science, CUDA, nVidia, Package, Sequence alignment, Smith-Waterman algorithm, Tesla C870

October 27, 2010 by hgpu

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

Daniel Cederman, Philippas Tsigas

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, nVidia, nVidia GeForce 8600 GTS, nVidia GeForce 8800 GTX, Package, Sorting

October 27, 2010 by hgpu

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

M. J. Harvey, G. Giupponi, G. De Fabritiis

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Tags: Biological Physics, Chemistry, Computational Physics, CUDA, GPU cluster, Molecular dynamics, nVidia, nVidia GeForce GTX 280, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

Simulating spin models on GPU

Martin Weigel

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Tags: CUDA, Ising model, Monte Carlo simulation, nVidia, Package, Physics, Statistical Mechanics, Tesla C1060

October 27, 2010 by hgpu

Fast fluid dynamics simulation on the GPU

Mark Harris

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Tags: Cg, Computer science, Fluid dynamics, Navier-Stokes equations, NSEs, nVidia, Package, Programming techniques

October 27, 2010 by hgpu

Monte Carlo integration on GPU

J. Kanzaki

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Tags: Computational Physics, CUDA, High Energy Physics - Experiment, High Energy Physics - Phenomenology, Monte Carlo integration, nVidia, nVidia GeForce GTX 285, Package, Physics

October 27, 2010 by hgpu

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model

Benjamin Block,Peter Virnau,Tobias Preis

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Tags: CUDA, GPU cluster, Ising model, Monte Carlo simulation, nVidia, Package, Physics, Tesla C1060

October 27, 2010 by hgpu

PyCUDA: GPU Run-Time Code Generation for High-Performance Computing

Andreas Klockner,Nicolas Pinto,Yunsup Lee,Bryan Catanzaro,Paul Ivanov,Ahmed Fasih

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Tags: Computer science, CUDA, High-level Languages, nVidia, Package

October 27, 2010 by hgpu

Efficient GPU-Based Texture Interpolation using Uniform B-Splines

Daniel Ruijters,Bart ter Haar Romeny,Paul Suetens

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Tags: Computer science, CUDA, Image processing, nVidia, nVidia GeForce 9800 GTX, Package

October 27, 2010 by hgpu

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

Profile Util library: A quick and easy way to get MPI, OpenMP and GPU runtime information

MaC: Mamba CPU performance predictor

MambaCPU: Enhanced Correlation Mining with State Space Models for CPU Performance Prediction

Mixed-precision finite element kernels

Mixed-precision finite element kernels and assembly: Rounding error analysis and hardware acceleration

SHMT: The Simultaneous and Heterogenous Multithreading project

General-Purpose Computing on Tensor Processors

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

Online Energy Optimization in GPUs: A Multi-Armed Bandit Approach

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high performance computing on graphics processing units: hgpu.org

Packages

On GPU’s viability as a middleware accelerator

Sequence alignment with GPU: Performance and design challenges

GPU-Quicksort: A practical Quicksort algorithm for graphics processors

ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

Simulating spin models on GPU

Fast fluid dynamics simulation on the GPU

Monte Carlo integration on GPU

Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model

PyCUDA: GPU Run-Time Code Generation for High-Performance Computing

Efficient GPU-Based Texture Interpolation using Uniform B-Splines

Recent source codes

Kokkidio: Kokkos+Eigen - write fast, readable multi-platform code

LLaMA-Inference-Bench

MATAR

Over-synchronization in GPU Programs

profile_util: simple C++ library to report memory, timing, thread affinity

MaC: Mamba CPU performance predictor

Mixed-precision finite element kernels

SHMT: The Simultaneous and Heterogenous Multithreading project

Superpipeline: A Universal Approach for Reducing GPU Memory Usage in Large Models

EnergyUCB-Bandit

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