high performance computing on graphics processing units: hgpu.org

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Accelerating solutions of PDEs with GPU-based swept time-space decomposition

Daniel J Magee, Kyle E Niemeyer

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Tags: Algorithms, cfd, Computational Physics, CUDA, Differential equations, Fluid dynamics, nVidia, Package, Partial differential equations, PDEs, Physics, Tesla K40

May 11, 2017 by hgpu

Block-Parallel IDA* for GPUs

Satoru Horie, Alex Fukunaga

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Tags: Artificial intelligence, Computer science, CUDA, nVidia, nVidia GRID K520, Package

May 11, 2017 by hgpu

A Design Methodology for Efficient Implementation of Deconvolutional Neural Networks on an FPGA

Xinyu Zhang, Srinjoy Das, Ojash Neopane, Ken Kreutz-Delgado

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Tags: Algorithms, Computer science, Computer vision, Deep learning, DSP, FPGA, Neural networks

May 11, 2017 by hgpu

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

Weihua Guo, You Xu, Xueyang Feng

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Tags: Biology, Computer science, Deep learning, Medicine, nVidia, nVidia GeForce GTX 1080, Package, Python, TensorFlow

May 11, 2017 by hgpu

Resource-Aware Just-in-Time OpenCL Compiler for Coarse-Grained FPGA Overlays

Abhishek Kumar Jain, Douglas L. Maskell, Suhaib A. Fahmy

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Tags: ARM, Computer science, DSP, FPGA, Heterogeneous systems, OpenCL

May 11, 2017 by hgpu

Towards Enhancing Performance, Programmability, and Portability in Heterogeneous Computing

Konstantinos Krommydas

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Tags: ATI, ATI Radeon HD 6550, ATI Radeon HD 7660, ATI Radeon HD 7970, Code generation, Compilers, Computer science, FPGA, Heterogeneous systems, Intel Xeon Phi, nVidia, OpenCL, Package, Performance, Tesla K20, Thesis

May 9, 2017 by hgpu

Efficient Parallel Strategy Improvement for Parity Games

John Fearnley

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Tags: Algorithms, Computer science, CUDA, Data Structures and Algorithms, Logic in Computer Science, nVidia, nVidia GeForce GTX 780, Package

May 9, 2017 by hgpu

Fast Sorting Algorithms using AVX-512 on Intel Knights Landing

Berenger Bramas

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Tags: Algorithms, Computer science, Intel Xeon Phi, OpenMP, Package, Sorting

May 9, 2017 by hgpu

Acceleration of Deep Learning on FPGA

Huyuan Li

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Tags: CNN, Computer science, Deep learning, FPGA, Neural networks, nVidia, OpenCL, Tesla K40, Thesis

May 9, 2017 by hgpu

Multidimensional upwind hydrodynamics on unstructured meshes using Graphics Processing Units I. Two-dimensional uniform meshes

Sijme-Jan Paardekooper

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Tags: Algorithms, Astrophysics, cfd, Computational Physics, CUDA, Fluid dynamics, Instrumentation and Methods for Astrophysics, nVidia, Package, Tesla K20, Triangular meshes

May 9, 2017 by hgpu

Compressing DMA Engine: Leveraging Activation Sparsity for Training Deep Neural Networks

Minsoo Rhu, Mike O'Connor, Niladrish Chatterjee, Jeff Pool, Stephen W. Keckler

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Tags: Compression, Computer science, CUDA, Deep learning, Neural networks, nVidia, nVidia GeForce GTX Titan X, Virtualization

May 6, 2017 by hgpu

cuTT: A High-Performance Tensor Transpose Library for CUDA Compatible GPUs

Antti-Pekka Hynninen, Dmitry I. Lyakh

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Tags: Algorithms, Benchmarking, Code generation, Computer science, CUDA, nVidia, Package, Tesla K20, Tesla K40, Tesla M40, Tesla P100

May 6, 2017 by hgpu

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

BioAgent Bench: An AI Agent Evaluation Suite for Bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Private LLM Inference on Consumer Blackwell GPUs: A Practical Guide for Cost-Effective Local Deployment in SMEs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Generating Literature-Driven Scientific Theories at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Nsight Python: A Python-First Profiling Toolkit for Seamless GPU Kernel Analysis (Tool)

Awesome LLM-Driven Kernel Generation

Towards Automated Kernel Generation in the Era of LLMs

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Tilus: A Tile-Level GPGPU Programming Language for Low-Precision Computation

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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high performance computing on graphics processing units: hgpu.org

Applications

Accelerating solutions of PDEs with GPU-based swept time-space decomposition

Block-Parallel IDA* for GPUs

A Design Methodology for Efficient Implementation of Deconvolutional Neural Networks on an FPGA

DeepMetabolism: A Deep Learning System to Predict Phenotype from Genome Sequencing

Resource-Aware Just-in-Time OpenCL Compiler for Coarse-Grained FPGA Overlays

Towards Enhancing Performance, Programmability, and Portability in Heterogeneous Computing

Efficient Parallel Strategy Improvement for Parity Games

Fast Sorting Algorithms using AVX-512 on Intel Knights Landing

Acceleration of Deep Learning on FPGA

Multidimensional upwind hydrodynamics on unstructured meshes using Graphics Processing Units I. Two-dimensional uniform meshes

Compressing DMA Engine: Leveraging Activation Sparsity for Training Deep Neural Networks

cuTT: A High-Performance Tensor Transpose Library for CUDA Compatible GPUs

Recent source codes

bioagent-bench: Benchmark for evaluating LLM agents in bioinformatics

Benchmark suite for LLM inference on NVIDIA consumer GPUs

Theorizer: from the paper Generating Literature-Driven Scientific Discoveries at Scale

Nsight Python: a Python kernel profiling interface based on NVIDIA Nsight Tools

Awesome LLM-Driven Kernel Generation

PhysProver: Advancing Automatic Theorem Proving for Physics

ParaCodex: A Profiling-Guided Autonomous Coding Agent for Reliable Parallel Code Generation and Translation

SeedFold: Scaling Biomolecular Structure Prediction

Tilus: A Tile-Level GPU Kernel Programming Language

Memory-Efficient Acceleration of Block Low-Rank Foundation Models on Resource Constrained GPUs

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